Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05940 ATGTCATCGGCGGCGAGAACCAATGTCTCCGGCAGTAACGAAGGAAAACACTATCCTCCTCCACTCGCCTCTCACAACGATATCCTCAATGACTCTACTGTCTTCTGGAACACTCTTCGTCGCTTTCACTTTCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGTAAGGAGCTAGATTTGCACGTTCTTTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTAGTTGTGGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCAACAACTACAAGTGCTTCTTTTGTACTAAGAAAACATTACTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATATTCACTCCATCAGCAGATGCATCTTCTGGAAATAGTCCCTCGTGGCGACCTGAATTGGCTATTGTTCAATATTCACCTAAGATGGTAAATGATAGTGCCCAATCTCATGATGAAGATAGTTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTAAAATTGGGTTCAGAGGTTCTCAAAGGGGTGCTTTACCATCCAGAACAAGTGGTTGCTGCTCCATCATTGGTTCCACAACATGCTATTGTACCATTCAATCTTCAATCTCATAGTTCTGGTAGGAGAAAGAGAAGAAAAAGAAAGTGGGACCCAAACTATCCAAAACCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTATCCAAACAGAGAAAGGGAATTTACTAAAATGATTGGTCAATCCTGGAATAGTCTTAGCCCTGAAGAAAGAATGATTTATCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGACAGAGTACAAAGAGAAAATGAAGGTTGGGCAGAATGTAGAACTTGGGCTTCCATAA 972 0.3951 MSSAARTNVSGSNEGKHYPPPLASHNDILNDSTVFWNTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFTPSADASSGNSPSWRPELAIVQYSPKMVNDSAQSHDEDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVAAPSLVPQHAIVPFNLQSHSSGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQNVELGLP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05940 323 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Trre6g05940 323 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Trre6g05940 323 Coils Coil 298 318 - -
Trre6g05940 323 Gene3D High mobility group box domain 225 320 IPR036910 -
Trre6g05940 323 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Trre6g05940 323 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g05940 323 SUPERFAMILY HMG-box 239 312 IPR036910 -
Trre6g05940 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Trre6g05940 323 Gene3D - 23 126 IPR036431 GO:0003677
Trre6g05940 323 SMART bright_3 30 121 IPR001606 GO:0003677
Trre6g05940 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 317 - -
Trre6g05940 323 SMART ARID_2 26 116 - -
Trre6g05940 323 SMART hmgende2 241 310 IPR009071 -
Trre6g05940 323 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Trre6g05940 323 MobiDBLite consensus disorder prediction 222 242 - -
Trre6g05940 323 CDD HMG-box_AtHMGB9-like 242 308 - -
Trre6g05940 323 SUPERFAMILY ARID-like 28 129 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05940 Trre-Chr6 59706658 59708519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05940 16 314 ARID Transcription Factor Family AT1G76110 63.607 2.15e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre6g05940 ARID 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05940 - - gmx:100784746 520.39