Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05939 ATGTATATGGGAGATACAGAGAGTTGTTGTAATAGCAAACTAGTTTTTGGTTCTGAATGGAATCAAAATGGAAAGGAGAGGCAGAAAATTGAAGTTTACATCAAAGTTCTTAATCGACTTAGGGAATTGAATGTCCCTGAGGCTATGGTTTCTGGTTTTGACGATGATCTTTGGGCGCACTTCCATCGCCTTCCCACTAGGTATGCATTGGATATGAATGTGGAGAGGGCCCAATATGTTCTTATGCATAAAAGATTACTGCATATTGCAAGAACCTCAGCTACAGCAACTGGACCTGCACTCGAAGTCCGTCTTGTACAGGTTCGTTCTGCTTCTGGAGTGAGTACTTGTAGTAATTCCCTTCATTCAAACTCGCAAAGTGAAGTTAGTCCTCAATATTCTGATATTCAAGGAAAAATGATGAGGTACATGCATGAAATTACAATTTCAACAAATGACAAGCCAAAACTTCTTAGTCAGTTGACTTCCTTACTGTCTGAGACTGGGCTCGACATTCAAGAAGCACACGCTTTTTCGACATTGGATGGCTATTCGTTAGATGTTTTCGTTGTTGGTGGTTGGGCAGTTGAGGAGACAGAAAAGTTAAAGCATGTACTAGCTAAGAAAGTTCTGAAACTTGAGGAGTGGTCTCGGTTGAAAGAAAATGGCAGTCTTCCTCTTGCAGAGCAAGAGAAAATTAGGATGAACATTATATCTAGACATGTAATTATTCCCAATCCTGAAAATGGTGTCTCGACGTGTGAACCAAGTTGGTTTAGATTTGAAAAGAAAATTGCATCTGGACTCTTCAGTGATTTGTATAAAGGTACATTATGTAATCAAGATGTAGCTATCAAAGTCCTTAAGCAAGAAAGTTTGAATGAAAATATACAAAGAGAGTTTTCTCAGGAAGTCTATATCCTAAGTAAAATTCATCACCAAAATGTTGTCAAATTTATCGGTGCTGGTACAAAACCCCCAAACCTTTACCTTGTCACAGAATATTTGTCTGGTGGAAGTATTTACGACCTGTTACATAAACGGAACACCGTCCTTACTCTTCCATCTTTGCTCAAAATAGCCATCGACGTTTCTGAAGGAATGAAATATTTACATCAGAATGATATCATACATCGGGACCTCAAGTCAGCTAATCTTTTGATAGATAAGACCGGTGTTGTTAAGGTTGCTGATTTTGGTGTAGCCAGAGTGCGTAATCAGTCTGGTATAATGACTGCAGAGACTGGAACTTATCGGTGGATGGCTCCGGAGGTTATTGAGCATAAGCCTTACAATCACAAAGCCGATGTCTTTAGCTTTGCAATTGTTCTCTGGGAGCTGCTTACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTCCACAAGGGTTTAAGGCCTAAAATTCCAAGGCATACTCATCCAAAGTTGGTGGAATTGCTTCAGTGGTGTTGGCACCAAGATCCATCTTTGAGACCTAATTTTTCAGAAATTCTAGAATTTCTGCTGCATATTTTTAAGATGATCACTGGGGAAGTAAAGGGAATGCGCAAGAAATGGTTAGTCAAAGGTGAACAATATTTGCAAAAAATATCATTGAAATTAGTCCTATAA 1632 0.3934 MYMGDTESCCNSKLVFGSEWNQNGKERQKIEVYIKVLNRLRELNVPEAMVSGFDDDLWAHFHRLPTRYALDMNVERAQYVLMHKRLLHIARTSATATGPALEVRLVQVRSASGVSTCSNSLHSNSQSEVSPQYSDIQGKMMRYMHEITISTNDKPKLLSQLTSLLSETGLDIQEAHAFSTLDGYSLDVFVVGGWAVEETEKLKHVLAKKVLKLEEWSRLKENGSLPLAEQEKIRMNIISRHVIIPNPENGVSTCEPSWFRFEKKIASGLFSDLYKGTLCNQDVAIKVLKQESLNENIQREFSQEVYILSKIHHQNVVKFIGAGTKPPNLYLVTEYLSGGSIYDLLHKRNTVLTLPSLLKIAIDVSEGMKYLHQNDIIHRDLKSANLLIDKTGVVKVADFGVARVRNQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFAIVLWELLTGKLPYEHLSPLQAAVGVVHKGLRPKIPRHTHPKLVELLQWCWHQDPSLRPNFSEILEFLLHIFKMITGEVKGMRKKWLVKGEQYLQKISLKLVL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05939 543 PRINTS Tyrosine kinase catalytic domain signature 370 388 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 PRINTS Tyrosine kinase catalytic domain signature 435 457 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 PRINTS Tyrosine kinase catalytic domain signature 479 501 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 PRINTS Tyrosine kinase catalytic domain signature 416 426 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 PRINTS Tyrosine kinase catalytic domain signature 333 346 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 Pfam Protein tyrosine and serine/threonine kinase 260 508 IPR001245 GO:0004672|GO:0006468
Trre6g05939 543 ProSiteProfiles ACT domain profile. 146 226 IPR002912 -
Trre6g05939 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Trre6g05939 543 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 508 - -
Trre6g05939 543 SUPERFAMILY ACT-like 141 208 IPR045865 -
Trre6g05939 543 ProSiteProfiles Protein kinase domain profile. 259 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05939 543 CDD STKc_MAP3K-like 265 508 - -
Trre6g05939 543 SMART serkin_6 259 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05939 543 SUPERFAMILY Protein kinase-like (PK-like) 253 508 IPR011009 -
Trre6g05939 543 Gene3D Phosphorylase Kinase; domain 1 255 337 - -
Trre6g05939 543 Gene3D Transferase(Phosphotransferase) domain 1 338 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05939 Trre-Chr6 59701252 59705692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05939 5 515 MAP Kinase Kinase Kinase AT4G35780 53.480 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre6g05939 PK_Tyr_Ser-Thr 9.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05939 - - gmx:100818047 712.22