Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre6g05927 | ATGTCAAGTAGCGGGGATACTCATTGGTGTTATAATTGCATGAGGTCAGTTCGACTGGGACGGCAACATGCGGTTTGCTCTGGTTGTGATGGGGGATTTGTTCAAGATCTCGATGATATGGTCCATGTTAGCTATGGAGCGGACAGCATCGAGGAACTAATTTCAGAACACAGTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATTCCACACAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAGAGGGACTCCAGGAACTGGTGTGGCGATAGGTAACTCGGTTAACTATTTTACTGGTCCTGGAGTAGAAGAACTGTTTGAACAGATTTCGGCTAATGACCGGCCAGGCCCTCCACCTGCATCTCGGTCCTCTATAGATGCAATTCCTATTGTGAAGATTGCGTCGAAGCATCTTCGTTCTGATCCACATTGTCCAGTATGCCAAGATAAATTTGAGCTTGGGTCTAATGCAAGACGAATGCCATGTAAGCATATGTTTCACTCAGATTGTATTATACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAACATAGTGGAAGAAGGAGCAACCCTTTTTCATTTTTGTGGCCTTTCGGCTCTTGA | 642 | 0.4533 | MSSSGDTHWCYNCMRSVRLGRQHAVCSGCDGGFVQDLDDMVHVSYGADSIEELISEHSPRFTTPLLIYGGQIPHRFSRQGGIDALFRGTPGTGVAIGNSVNYFTGPGVEELFEQISANDRPGPPPASRSSIDAIPIVKIASKHLRSDPHCPVCQDKFELGSNARRMPCKHMFHSDCIIPWLVQHNTCPVCRQELPQHSGRRSNPFSFLWPFGS | 213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre6g05927 | 213 | SMART | ring_2 | 150 | 190 | IPR001841 | - | |
| Trre6g05927 | 213 | Pfam | Ring finger domain | 149 | 191 | IPR001841 | - | |
| Trre6g05927 | 213 | SUPERFAMILY | RING/U-box | 130 | 203 | - | - | |
| Trre6g05927 | 213 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 191 | IPR001841 | - | |
| Trre6g05927 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 197 | IPR013083 | - | |
| Trre6g05927 | 213 | FunFam | E3 ubiquitin-protein ligase RING1-like | 113 | 197 | - | - | |
| Trre6g05927 | 213 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 101 | 195 | - | - | |
| Trre6g05927 | 213 | Pfam | zinc-ribbon | 7 | 36 | IPR039525 | GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre6g05927 | Trre-Chr6 | 59608307 | 59608948 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre6g05927 | 97 | 195 | C3H Transcription Factor Family | AT5G01980 | 41.584 | 2.35e-22 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre6g05927 | K11982 | - | jre:109008136 | 286.189 |