Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05924 ATGATGCTTAATTCAGTTCTTTTTGCGCTTTTTCTTCCTTGTCTTGGAATGAGTGCAATTTTCATCGTCTACATGTGTCTTCTATGGTACACCACCACTCGTAACAACCGTTCTGATGGTACACCACCGATTAAGCCGGTCACCGGTAAGGGTCTTTCTCCTTTAGATCTTGAAAAGCTACCTAAAATTACCGGTAAAGAATTAGTTGCGGTCACCGAATGTGCCGTTTGCCTCGACGAAATCGATAATGAACAACCGGCTCGTCTGGTTCCTGGTTGTAATCACGCTTTTCATGTTCAATGTGCTGACACGTGGCTCTCTAAACACCCTCTTTGTCCTCTCTGTAGAACCAAACTCGACCCTCAGATTCTCCATTCTGAAAGCCCCTGCTAA 393 0.4478 MMLNSVLFALFLPCLGMSAIFIVYMCLLWYTTTRNNRSDGTPPIKPVTGKGLSPLDLEKLPKITGKELVAVTECAVCLDEIDNEQPARLVPGCNHAFHVQCADTWLSKHPLCPLCRTKLDPQILHSESPC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05924 130 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Trre6g05924 130 SMART ring_2 74 115 IPR001841 -
Trre6g05924 130 SUPERFAMILY RING/U-box 73 122 - -
Trre6g05924 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 123 - -
Trre6g05924 130 Pfam Ring finger domain 73 116 IPR001841 -
Trre6g05924 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05924 Trre-Chr6 59583749 59584141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05924 2 130 C3H Transcription Factor Family AT5G42200 54.412 1.70e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05924 K19037 - gmx:100811160 221.476