Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05906 ATGGCTGTTCATACAAAATATCGTCTCATTACTTACACACCAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCGTCCAACTGTCTTCCGGCTAAGGCGTTGAAATATGAGCCTGCGGGTCATTCTTTTCATTCTGCTGCACTTAAACTTATGGGTGTTAAGGAGGAAAAAGATAACAAAGATGATAAGAAGAAAGTGGTTGACGATAAGGAACAGGCTTATTTGCCGTCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGAAAAGGAGACAAAGAACAACAGGATCACTATGCATTATTGGGATTGAGCCATCTTAGGTATCTTGCTACAGAAGATCAAATTCGTAAAAGTTACCGTGACTCTGCCTTGAGGTTTCATCCGGACAAACAAGCTGCTCTTCTTCTTGCCGAGGAAACTGAGGTTGCCAAGGAGGCTAAAAAGGTTGAAATTGAAACTCATTTCAAGGCAATCCAGGAGGCATATGAAGTGTTGGTTGATCCCACAAAGAGAAGAATTTATGATTCTACCGATGAGTTTGATGATGAGATTCCCACCGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCAGCTTTCATGAGGAATGGACGGTGGTCAGTTAATCAACCAATTCCATCATTAGGTGATGATAAGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCCCAAGACGAAGAGTTTGATCTTGAGCAAGCTGAGTCTCGAGAGCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACAATCAGAAAAATCTAGGAAGGAAGAGTATGCACGGATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATATTGAGAAGAAAGGAAGAGATAAAGGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTTCATGGCAAAGAAGTTGGAGGAGGAAGAAGCAGCTAGAATTGCTGAAGAAGAGAAAAAACGAAAAGCAGAGGAAGATAGAAAAGCTGCTGAAGTTGCGTCGCAACAGAAAAAGGTGAGGGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGCGGACACGCCTTCGAACTCTCTCAGGACCTATCTCTTCACAACACGTACTTGATATTTCTGATGACGATGTAGAAGAGCTTTGCATGTCATTTGATATTGATCAGTTGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGTGTTAGAGCAGGCAGAAGCTCTTAGAGATGCAGTGAATAGCAAGAAACATGCTGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCAGTATCAGTAGTTCTCTAGCAGGCTACGAAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTATTGAGGAAAGGAGTGCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCCGTTGAAGAAATAATGAAAGCTACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTCCTTGAGAAGAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAACTGGAAGGGGTATCAATACCAGCAACGACACCCGAAAATAGTGCTGCCATCTCAACAACAGCAACAATACCAGCACCGTCGACAACGATAAAAACAGCACCAACACCACCGACGATGACGACAACTACAACAACAACAACAAACAACATCAGCTCGGAAGAATCTCAAGGAGTTTCAGAACAGGAAGTGTGGTCTGCAGTGCAAGAAAGAGCACTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTATCTGCAGCTGTACCTGGGAAGACTGTGAACCAGTGCAAGAAGAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACAGCAGTTTGA 1992 0.4252 MAVHTKYRLITYTPEIVDGQPIFVSSNCLPAKALKYEPAGHSFHSAALKLMGVKEEKDNKDDKKKVVDDKEQAYLPSDSYSSKSKKKSGKGDKEQQDHYALLGLSHLRYLATEDQIRKSYRDSALRFHPDKQAALLLAEETEVAKEAKKVEIETHFKAIQEAYEVLVDPTKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDSFYDFWYSFKSWREFPQDEEFDLEQAESREHKRWMERQNAKQSEKSRKEEYARIRTLVDNAYKRDPRILRRKEEIKAEKKRKKESKFMAKKLEEEEAARIAEEEKKRKAEEDRKAAEVASQQKKVREKEKKLLRKERTRLRTLSGPISSQHVLDISDDDVEELCMSFDIDQLRGLCEKMEGKEVLEQAEALRDAVNSKKHAVDEKSNQQNGSVKANGSSISSSLAGYEEKKEKPWTKEEIELLRKGVQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTPENSAAISTTATIPAPSTTIKTAPTPPTMTTTTTTTTNNISSEESQGVSEQEVWSAVQERALVQALKTFPKEANQRWERVSAAVPGKTVNQCKKKFAMMKENFRNKKTAV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05906 663 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 662 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trre6g05906 663 CDD SANT 462 504 IPR001005 -
Trre6g05906 663 Pfam Myb-like DNA-binding domain 461 502 IPR001005 -
Trre6g05906 663 Pfam Myb-like DNA-binding domain 606 651 IPR001005 -
Trre6g05906 663 Coils Coil 53 73 - -
Trre6g05906 663 Gene3D - 599 663 - -
Trre6g05906 663 Gene3D - 456 513 - -
Trre6g05906 663 MobiDBLite consensus disorder prediction 569 601 - -
Trre6g05906 663 SUPERFAMILY Chaperone J-domain 94 203 IPR036869 -
Trre6g05906 663 SMART dnaj_3 96 171 IPR001623 -
Trre6g05906 663 Gene3D DnaJ domain 80 189 IPR036869 -
Trre6g05906 663 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Trre6g05906 663 MobiDBLite consensus disorder prediction 424 459 - -
Trre6g05906 663 SUPERFAMILY Homeodomain-like 605 659 IPR009057 -
Trre6g05906 663 FunFam Myb family transcription factor 601 661 - -
Trre6g05906 663 ProSiteProfiles Myb-like domain profile. 455 510 IPR001005 -
Trre6g05906 663 PRINTS DnaJ domain signature 102 120 IPR001623 -
Trre6g05906 663 PRINTS DnaJ domain signature 151 171 IPR001623 -
Trre6g05906 663 PRINTS DnaJ domain signature 120 135 IPR001623 -
Trre6g05906 663 ProSiteProfiles Myb-like domain profile. 607 653 IPR001005 -
Trre6g05906 663 CDD DnaJ 97 168 IPR001623 -
Trre6g05906 663 Pfam DnaJ domain 97 176 IPR001623 -
Trre6g05906 663 CDD SANT 607 653 IPR001005 -
Trre6g05906 663 SMART sant 603 655 IPR001005 -
Trre6g05906 663 SMART sant 459 512 IPR001005 -
Trre6g05906 663 MobiDBLite consensus disorder prediction 256 277 - -
Trre6g05906 663 ProSiteProfiles SANT domain profile. 602 657 IPR017884 -
Trre6g05906 663 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Trre6g05906 663 SUPERFAMILY Homeodomain-like 461 505 IPR009057 -
Trre6g05906 663 Coils Coil 303 366 - -
Trre6g05906 663 MobiDBLite consensus disorder prediction 332 357 - -
Trre6g05906 663 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05906 Trre-Chr6 59456825 59458816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05906 94 297 C2H2 Transcription Factor Family AT1G74250 27.236 3.16e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g05906 DnaJ 4.1e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05906 K09522 - gmx:100814414 847.81