Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05904 ATGGCGGTTCATACAAAATATCGTCTCATTACTTACTCACAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCGTCGAATTGTCTACCGGCCAAGGCTTTGAAATATGAGCCGGCAGGCCATTCTTTTCATTCTGCCGCACTTAAACTCATGGGTGTTAAGGAAGAAAAAGATAACAAAGATGATAAGAAGAAAGTGGTTGGCGATAAGGAACAGGCTTATTTGCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGAAAAGGAGACAAAGAACAACAGGATCACTATGCATTATTGGGATTGAGCCATCTTAGGTATCTTGCTACAGAAGATCAAATTCGTAAAAGCTACCGTGACACTGCCTTGAGGTTTCATCCGGACAAACAAGCTGCTCTTCTTCTTGCCGAGGAAACGGAGGTTGCCAAGGAGGCTAAGAGGGTTGAAATAGATACTCATTTCAAGGCAATCCAGGAGGCATATGAAGTGTTGGTTGATCCCACAAAGAGAAGAATTTATGATTCTACCGACGAGTTTGATGATGAGATTCCCACCGACTGTGCTCCACAAGATTTCTTCAAGGTGTTCGGTCCAGCTATTATGAGGAATGGACGGTGGTCGGTTAATCAACCAATTCCATCATTGGGGGATGATACGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCTCAGGCCGATGAGTTTGATCTTGAGACAGCTGAGACTCGAGAAGATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCCAGGAAGGAAGAGTATGCACGGATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATATTGAGAAGAAAGGAGGAGATAAAGGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTTCTTGGCAAAGAAGTTAGAGGAGGAAGAAGCAGCCAGAATTGCTGAAGAGGAGAAAAAACGAAAAGCAGAGGAAGATAGAAAAGCTGCTGAAGCTGCTTCGCAACAGAAAAAGGTGAGGGAGAAAGAGAAAAAGCTCCTCCGGAAGGAGAGGACACGCCTTCGTACTCTCTCAGGACCTATCTCGTCACAACACATACTTGATATTTCTGCAGACGATGTAGAAGAGATTTGCATGTCATTTGATATTGATCAGTTGAGGGGTTTATGCGAGAAAATGGAAGGCAAAGAGCTGTTAGAACAAGCTGAAGCTCTTAGAGATGCAGTGAGTAGCAAGAAACATGTTGATGAGAAAAGTAATCAGCAAAATGGCTATGTAAAGGCTAATGGAAGCATAAGTTCTCTAGCTGGCTACACAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTGTTGAGGAAAGGAGTGCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAAGTTGTTTCAGAATACATTGGCACCGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACTGTTCTCCTCCAGAAGCCCGACACAGCCAAAGCTTTTGACATATTTCTTGAGAAGAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGACAACCAGAGAAGAACTGGAAGGGGTATCAGTACCAGCAACAACACCTGAAAATGGTGCTGCCTTCTCAACAACAACAACAATACCAACACCGGAGACAACAAAAACAATAGCAACACCGGAGACAACAAAAACAATAGCAACACCGGAGACAAGAAAAACAATAGCAACACCGGTGACAGCGACAAAAACAATACCAACACCAACACCACCGACAACGTCAACAACAAACAATATCAGCTTGGAAGAATCTCAAGGAGTTACAGAACAGGAGGTGTGGTCTGCAGTACAGGAAAGAGCACTTGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTTCCTGGGAAGACTGTGAACCAGTCAAATGGTTGGAATAAACGAGATAGACAATTCCAAGAGCGCCCACTTTTTTCACACTACGATGACACCTGCTTCTCCTTCTTTCCTTCATGCATGAAGTATACTAGGATGGGTGGTAGTTACAAAATCATGGACCAGAGCCTCCGAAACACTAGAACAAAAGCAGAGCCTTCACCAAAACTCCCCCCAATCGCCGTGTGCCTCGTAGAAGACCCGTTGTCCGTCCCTACGTCTCCTTCCACCCGATCTCTCCTTCCAGACGCCCCGCAGTCCGTCCTTGCTTCGCTATGCCCCTACGCTCTCTTGCCATGTTGA 2310 0.4407 MAVHTKYRLITYSQEIVDGQPIFVSSNCLPAKALKYEPAGHSFHSAALKLMGVKEEKDNKDDKKKVVGDKEQAYLPSDSYSSKSKKKSGKGDKEQQDHYALLGLSHLRYLATEDQIRKSYRDTALRFHPDKQAALLLAEETEVAKEAKRVEIDTHFKAIQEAYEVLVDPTKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAIMRNGRWSVNQPIPSLGDDTTSIKEVDSFYDFWYSFKSWREFPQADEFDLETAETREDKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEIKAEKKRKKESKFLAKKLEEEEAARIAEEEKKRKAEEDRKAAEAASQQKKVREKEKKLLRKERTRLRTLSGPISSQHILDISADDVEEICMSFDIDQLRGLCEKMEGKELLEQAEALRDAVSSKKHVDEKSNQQNGYVKANGSISSLAGYTEKKEKPWTKEEIELLRKGVQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDIFLEKRKPAAQSIASPLTTREELEGVSVPATTPENGAAFSTTTTIPTPETTKTIATPETTKTIATPETRKTIATPVTATKTIPTPTPPTTSTTNNISLEESQGVTEQEVWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVNQSNGWNKRDRQFQERPLFSHYDDTCFSFFPSCMKYTRMGGSYKIMDQSLRNTRTKAEPSPKLPPIAVCLVEDPLSVPTSPSTRSLLPDAPQSVLASLCPYALLPC 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05904 769 MobiDBLite consensus disorder prediction 332 359 - -
Trre6g05904 769 CDD SANT 459 501 IPR001005 -
Trre6g05904 769 Gene3D - 627 667 - -
Trre6g05904 769 SUPERFAMILY Homeodomain-like 458 502 IPR009057 -
Trre6g05904 769 Gene3D - 453 510 - -
Trre6g05904 769 SMART sant 456 509 IPR001005 -
Trre6g05904 769 SMART sant 624 672 IPR001005 -
Trre6g05904 769 SUPERFAMILY Homeodomain-like 625 665 IPR009057 -
Trre6g05904 769 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Trre6g05904 769 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 665 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trre6g05904 769 SMART dnaj_3 96 171 IPR001623 -
Trre6g05904 769 PRINTS DnaJ domain signature 120 135 IPR001623 -
Trre6g05904 769 PRINTS DnaJ domain signature 151 171 IPR001623 -
Trre6g05904 769 PRINTS DnaJ domain signature 102 120 IPR001623 -
Trre6g05904 769 Gene3D DnaJ domain 80 189 IPR036869 -
Trre6g05904 769 MobiDBLite consensus disorder prediction 551 569 - -
Trre6g05904 769 MobiDBLite consensus disorder prediction 54 71 - -
Trre6g05904 769 Pfam DnaJ domain 97 176 IPR001623 -
Trre6g05904 769 CDD DnaJ 97 168 IPR001623 -
Trre6g05904 769 Pfam Myb-like DNA-binding domain 458 499 IPR001005 -
Trre6g05904 769 MobiDBLite consensus disorder prediction 54 94 - -
Trre6g05904 769 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Trre6g05904 769 MobiDBLite consensus disorder prediction 547 569 - -
Trre6g05904 769 CDD SANT 628 665 IPR001005 -
Trre6g05904 769 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Trre6g05904 769 FunFam Myb family transcription factor 622 667 - -
Trre6g05904 769 Coils Coil 303 366 - -
Trre6g05904 769 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05904 Trre-Chr6 59447937 59451388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05904 94 297 C2H2 Transcription Factor Family AT1G74250 28.049 1.92e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g05904 DnaJ 5.4e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05904 K09522 - gmx:100814414 791.956