Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05902 ATGCTTGTACCTCCCTGTCTGTTTGATTTTGCGAAGGAGATGATTGCTAAGTCCGATGATAAAACCGTTCTGGCAACCAAACTCTCACGTGAAACAACGAAGGACTCTCATTTGCTTGAGCTTTTCAAGCATATTGGTGATGTCAGCAGTGCCAAGCTTGCTATTAATCAAGAAACTGGCTTAAGTGGGCAATTTGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCAGAAGGCTATTGAAGAACTCAATGGATATGTGTATGGCTGGGACAAAAGCATCGTGGAAGTTGATCGGCAAAAAAATGAAAATCGGCCGATTTTAGGGTTTTTGGCGATTTTTTGGGTTTTCGGCCGATTTTAG 363 0.4242 MLVPPCLFDFAKEMIAKSDDKTVLATKLSRETTKDSHLLELFKHIGDVSSAKLAINQETGLSGQFGFVTFVTKEDAQKAIEELNGYVYGWDKSIVEVDRQKNENRPILGFLAIFWVFGRF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05902 120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 102 IPR000504 GO:0003723
Trre6g05902 120 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 101 - -
Trre6g05902 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 88 IPR000504 GO:0003723
Trre6g05902 120 SUPERFAMILY RNA-binding domain, RBD 18 106 IPR035979 GO:0003676
Trre6g05902 120 Gene3D - 11 106 IPR012677 -
Trre6g05902 120 SMART rrm1_1 22 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05902 Trre-Chr6 59431811 59432173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05902 3 98 Eukaryotic Initiation Factors Gene Family AT5G06000 42.157 7.92e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05902 - - tpra:123898674 118.627