Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05890 ATGTCGATTCCAACCGAGGATCAAATTCAACATTTCTCTCAACTCAATTTCAACCTAATGCATTCTCCTCCTCCTCCTTCTAACCCTTCTCCGTTTACTGTTATGCATCCCTTGAGTCAGAGAAATGAAATCAATAATGCCAACTTGCACACTAGTAGCAATGTCGAAGCATTTCCTGGTCAGAGCAACATAGTTAATCTTCCTCCTCCTCTTCAAACTGAGCCCGTCCAAAGAGGAAAGAATAATGGTAAATCAAAAGTTGCAAGAAATGGCAAATCCGCGGCTCAGAATTCAAATACAGAATCTCTGAATTCAACTGCAGTTAATAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCAAGATGCTAAGGATGGTACGCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAACGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGACGGACTTGGGCCACGAGAACTGGAGGATCAAGTTAATGCTCTACAGGCTGAAGTTGAAAGTTTATATGCCGAGGAATACAAACTTGAGGAGTGTATAAGCGAAAGGAAGGAGCTTATAAGAAACCTGGAGGAAAGTAAAAACACCGGAAAGTACCTTTTTTTTACCGAGGAAGATATTCTTACTCTTCCATGCTTCCAGAATAAGCAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCCGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTGTTAGAAGTGCAACTGGACCTATAAATTTGTACCTCTTGAACAAGCGCGACAGTAAGTTTGAGGGTGTGAGTGTCAAGCAGTCAAAGTTAGAAGATCCATCGTGCAGTAGCAACCACTGTAGAATGGAGGGCGTGGGACTGTTAGAAGGCCAGGGTGTTCAGAAAAACCCTTCCGAGAGTTTAAGTTTGCTTGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACAGATTTGGATGTTGACGGTGACTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGGGGTATAAATATCTTCTATCTACTCTTTCATTATATGAACTTGATTCTTTGGTTTTACCTCTAACCTCTAATGATGATACAAATCCATCAGTTTGA 1230 0.4049 MSIPTEDQIQHFSQLNFNLMHSPPPPSNPSPFTVMHPLSQRNEINNANLHTSSNVEAFPGQSNIVNLPPPLQTEPVQRGKNNGKSKVARNGKSAAQNSNTESLNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELEDQVNALQAEVESLYAEEYKLEECISERKELIRNLEESKNTGKYLFFTEEDILTLPCFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLLNKRDSKFEGVSVKQSKLEDPSCSSNHCRMEGVGLLEGQGVQKNPSESLSLLGSEAFGIQQITPTDLDVDGDYWFQSDPQVGLTELWGYKYLLSTLSLYELDSLVLPLTSNDDTNPSV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05890 409 SMART E2F_TDP_2 112 177 IPR003316 GO:0005667|GO:0006355
Trre6g05890 409 Pfam E2F/DP family winged-helix DNA-binding domain 114 177 IPR003316 GO:0005667|GO:0006355
Trre6g05890 409 Pfam E2F transcription factor CC-MB domain 193 292 IPR032198 GO:0046983
Trre6g05890 409 SUPERFAMILY "Winged helix" DNA-binding domain 112 175 IPR036390 -
Trre6g05890 409 PANTHER TRANSCRIPTION FACTOR E2F 73 382 IPR015633 GO:0000978|GO:0006357
Trre6g05890 409 Coils Coil 183 203 - -
Trre6g05890 409 FunFam E2F transcription factor 1 106 179 - -
Trre6g05890 409 Coils Coil 207 227 - -
Trre6g05890 409 Gene3D - 107 179 IPR036388 -
Trre6g05890 409 SUPERFAMILY E2F-DP heterodimerization region 188 294 IPR037241 -
Trre6g05890 409 MobiDBLite consensus disorder prediction 59 102 - -
Trre6g05890 409 Gene3D - 184 295 - -
Trre6g05890 409 CDD E2F_DD 188 295 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05890 Trre-Chr6 59353252 59356713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05890 80 378 E2F-DP Transcription Factor Family AT1G47870 52.333 1.42e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre6g05890 E2F_CC-MB 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05890 K06620 - gmx:100797301 486.878