Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05872 ATGCTACCAACAACGGCTATATTTCTCACCTTCATTGCATCACTCACCACCACCTTCACCTTAACACATGCAACATCACAAAACAACTCATCATCTCACTCTGAAATCCAAGCCTTACTAACCTTCAAACAAAACCTTCTTGACCCACTTAACTCATTAACTTCTTGGGATCCATCAACACCATCAGCACCATGTGACTGGCATGGCATTCTCTGTTACAACAACAACAACAACAACAACAGAGTCCACACTATACGCTTACCTCGTCTTCAACTCACTGGTTCACTCACTCCATCACTCTCTAATCTCTCACAGCTTCGAAAACTAAGTCTTCATTCCAACAACCTTAACTCTTCAATACCTTCTTCTCTTTCTCACTGTCTCTTCCTCCGTGCTGTTTATCTTCACAACAACTCTCTCTCCGGTAACCTTCCATCTTCACTTCTCAACCTCACCAACCTTCAAATTCTCAACCTTGCTCGTAACTTTCTCTCTGGTACTATCCCAAATCATCTCTCTAACTCTCTACGGTTCCTTGATTTGTCGTCGAACTCATTCTCCGGCGACATTCCGGGGAACTTTTCATCGAAATCTCAGCTTCAACTCATCAACCTTTCACATAACAGTTTCACCGGAGGAATACCGGTTACTGTTGGAGCATTACAGCATTTGGAGTATCTTTGGTTAGACAATAATCATCTTCATGGAACGTTACCTTCTGCTGTTGCTAACTGTTCCTCTATGGTGCACCTTAGCGCAGAGGATAATTTCATTGGTGGGTTGATTCCTTCAACTATAGGGACGATGCCAAAGCTTCAAGTGTTGTCACTTTCAATGAATCAACTTTCTGGTTTTGTCCCCACTTCACTGTTTTGCAATAATAACACCAATCTTAGAAATGTTCAACTTGGGTTTAATAGACTCACGGGTATTTCAAATCCAAAAAATGGAAAATGTGTTAATGATTTTTTGGAGTTTTTAGACCTTAAAGAGAATCACATTATTCACAATTTGTTTCCTTTTTGGTTGACCAATGTGAAATCTTTGAGGACTCTTGATCTATCTGGAAACTCATTTCCAGGTTCTCTTCCTCAAGATATTGGAAATCTTTTCTTGTTAGAAGAGTTGAAGCTTTCTGATAATTTGTTATCTGGTGTTGTTCCAAGTAGCATTGTGAAATGTAGATTGTTGAAGATTCTTGATCTTCAAAGAAATCGATTTTCTGGTCTCATTCCTTATTTTCTTGGAGAGATGACAAATCTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTTAATTCCAAAGAGTTATGGAACTCTTCATGGGTTAGAGATTTTGGATTTAAGCAACAACAAGCTCAATGGGATTTTGCCTTTGGGGATCATGCAGTTAGGTAACATGAGTGTTTTGAATCTCAGCAACAATAGATTCTCCGGTCAAGTTTCGTCTCGAATTGGAGACTTGATGGCTTTGCAGGTTCTTAATTTGAGCCAATGTGGGTTTTCTGGTAGTGTTCCAGCTACATTGGGGAATTTGATGAACCTGAGAGTGTTGGATTTAAGTAAACAAAATCTTTCAGGTGAGTTACCTGTTGAGATTTTCGGATTACCGAGTTTGGAAGTCGTGGCACTTGATGGAAACCGTTTGAGTGGTTCTGTTCCTGAGGGTTTCAGCAGCATTGTTAGTCTAAGGTATCTTAATCTTAGTTCTAATGCTTTTGTTGGTAACATTCCAACAACTTATGGTTTTATAAGTTCCTTAGTTGTTCTTTCTTTGTCTCACAATTTCATTTCTGGTTCAATACCTAATGAGATTGGTGGTTGTTCTCAACTTGAAGTGCTTCAGCTTCGATCAAATCATCTAGTAGGTAACATTGCTCCGAGTGTTATCTCTCAGCTTTCACGTTTAAAAGAGCTTAATTTGGGACAAAATGGACTCAAAGGTGATATCCCAGATGAGATATCAAAGTGTTCATCTTTGAGTTTACTTTGTTTGGATGCTGCAGGACTATGTCTTTTAGTATTGTGTTGCTGTGGCTATGTTTATAGTCTCTTAAGATGGCGAAGAAAGCTTCGAGAAGGAGTAACAGGCGAGAAGAAACGTAGTCCAACAAGTGCAGGCTCAAATGGAGAAAGAAACAGCAGAGGAAGTGGTGAAAATGGAGGGCCAAAACTCATAGTATTCAACAACAAAATCACCTATGCAGAGACATTAGAAGCAACAAGAAACTTCGATGAAGAAAACGTTTTAAGCCGAGGAAAACATGGACTTGTTTTCAAAGCCTCATATCAAGATGGAATGGTTCTATCAATTCGTAGACTTCCAAACGGAGCAACATTGATCGATGAAACCACATTCCGCAAAGAAGCAGAATCATTAGGTACATTGCTTCAAGAAGCTTCACAACAAGACGGTCATGTTTTGAATTGGCCAATGCGTCATTTAATTGCATTGGGTATTGCTCGCGGATTGGGTTATTTACACTCGGTGGAAATTGTTCATGGTGATGTTAAGCCACAAAATGTTCTTTTTGATGCTGATTTTGAAGCCCATTTATCTGAATTCGGGTTAGACCGGTTAACAATGGTTAATGTCCCCGGCCCAATAGAATCCGCGGCATCATCATCATCATTGACGACAGCGCCAGTTGGTTCATTGGGTTACGTGGCACCGGAAGCGGTGCTAACCGGACAAGTGACAAAGGAAGGAGATATATACAGTTTTGGGATAGTTTTATTGGAGATATTGACAGGAAGAAAAGCTGTGATGTTTACACAAGATGAAGATATAGTGAAGTGGGTGAAGAAACAATTACAAAAAGGTTTGATTTCTGAGTTATTGGAACCTGGTTTGCTTGAGATTGATCAAGAATCATCAGAATGGGAAGAGTTTTTGTTAGGTGTTAAAGTAGCACTTCTTTGCACAGCACATGATCCTCTTGATAGACCTTCTATTAATGATATTGTTTTCATGCTTGAAGGTTGTCGTGTTGGACCTGATATTCCTTCTTCTGCTGATCCTACCACACTACCTTCTCCTGTTTCTTGA 3054 0.3962 MLPTTAIFLTFIASLTTTFTLTHATSQNNSSSHSEIQALLTFKQNLLDPLNSLTSWDPSTPSAPCDWHGILCYNNNNNNNRVHTIRLPRLQLTGSLTPSLSNLSQLRKLSLHSNNLNSSIPSSLSHCLFLRAVYLHNNSLSGNLPSSLLNLTNLQILNLARNFLSGTIPNHLSNSLRFLDLSSNSFSGDIPGNFSSKSQLQLINLSHNSFTGGIPVTVGALQHLEYLWLDNNHLHGTLPSAVANCSSMVHLSAEDNFIGGLIPSTIGTMPKLQVLSLSMNQLSGFVPTSLFCNNNTNLRNVQLGFNRLTGISNPKNGKCVNDFLEFLDLKENHIIHNLFPFWLTNVKSLRTLDLSGNSFPGSLPQDIGNLFLLEELKLSDNLLSGVVPSSIVKCRLLKILDLQRNRFSGLIPYFLGEMTNLKELSLGGNFFTGLIPKSYGTLHGLEILDLSNNKLNGILPLGIMQLGNMSVLNLSNNRFSGQVSSRIGDLMALQVLNLSQCGFSGSVPATLGNLMNLRVLDLSKQNLSGELPVEIFGLPSLEVVALDGNRLSGSVPEGFSSIVSLRYLNLSSNAFVGNIPTTYGFISSLVVLSLSHNFISGSIPNEIGGCSQLEVLQLRSNHLVGNIAPSVISQLSRLKELNLGQNGLKGDIPDEISKCSSLSLLCLDAAGLCLLVLCCCGYVYSLLRWRRKLREGVTGEKKRSPTSAGSNGERNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLPNGATLIDETTFRKEAESLGTLLQEASQQDGHVLNWPMRHLIALGIARGLGYLHSVEIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMVNVPGPIESAASSSSLTTAPVGSLGYVAPEAVLTGQVTKEGDIYSFGIVLLEILTGRKAVMFTQDEDIVKWVKKQLQKGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTAHDPLDRPSINDIVFMLEGCRVGPDIPSSADPTTLPSPVS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05872 1017 Pfam Leucine Rich Repeat 348 370 IPR001611 GO:0005515
Trre6g05872 1017 Pfam Leucine Rich Repeat 153 174 IPR001611 GO:0005515
Trre6g05872 1017 Gene3D Phosphorylase Kinase; domain 1 727 796 - -
Trre6g05872 1017 SUPERFAMILY Protein kinase-like (PK-like) 733 1011 IPR011009 -
Trre6g05872 1017 ProSiteProfiles Protein kinase domain profile. 687 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05872 1017 MobiDBLite consensus disorder prediction 698 726 - -
Trre6g05872 1017 Gene3D Ribonuclease Inhibitor 32 219 IPR032675 -
Trre6g05872 1017 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 196 - -
Trre6g05872 1017 Gene3D Transferase(Phosphotransferase) domain 1 797 1001 - -
Trre6g05872 1017 SUPERFAMILY RNI-like 263 661 - -
Trre6g05872 1017 ProSiteProfiles Leucine-rich repeat profile. 444 465 IPR001611 GO:0005515
Trre6g05872 1017 SMART serkin_6 746 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05872 1017 MobiDBLite consensus disorder prediction 703 718 - -
Trre6g05872 1017 Gene3D Ribonuclease Inhibitor 220 482 IPR032675 -
Trre6g05872 1017 SMART LRR_typ_2 466 490 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 346 370 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 538 561 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 151 175 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 103 127 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 418 441 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 635 659 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 442 465 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 269 293 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 586 610 IPR003591 -
Trre6g05872 1017 SMART LRR_typ_2 221 245 IPR003591 -
Trre6g05872 1017 Pfam Protein kinase domain 799 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05872 1017 FunFam Leucine-rich repeat receptor protein kinase EMS1 339 438 - -
Trre6g05872 1017 Pfam Leucine rich repeat 612 668 IPR001611 GO:0005515
Trre6g05872 1017 Pfam Leucine rich repeat 516 574 IPR001611 GO:0005515
Trre6g05872 1017 Pfam Leucine rich repeat 175 234 IPR001611 GO:0005515
Trre6g05872 1017 Pfam Leucine rich repeat 419 479 IPR001611 GO:0005515
Trre6g05872 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Trre6g05872 1017 Gene3D Ribonuclease Inhibitor 483 581 IPR032675 -
Trre6g05872 1017 Gene3D Ribonuclease Inhibitor 582 674 IPR032675 -
Trre6g05872 1017 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 791 1002 - -
Trre6g05872 1017 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 311 - -
Trre6g05872 1017 PANTHER UNNAMED PRODUCT 295 925 - -
Trre6g05872 1017 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 469 673 - -
Trre6g05872 1017 SUPERFAMILY L domain-like 63 387 - -
Trre6g05872 1017 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05872 Trre-Chr6 59192685 59196152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05872 32 1016 Receptor kinase-like Gene Family AT4G36180 52.436 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Trre6g05872 Pkinase 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05872 - - gmx:100784917 828.55