Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05866 ATGAAGATCCAGTGCGACGTGTGTCACAAACAGCAAGCTTCTTTATTCTGCACCGCCGACGAAGCTGCCCTATGCTCCGCCTGCGACCACTGCATCCATCATGCTAACAAGCTCGCCTCTAAACACCTTCGCTTCTCTCTCAACGACGCTAATTTTCCCAACAATTTACCTCTCTGCGATATTTGCCATGAAAGAAAAGGATTTGTTTTTTGTCAAGAAGATAGAGTGATTTTGTGCAAAGAATGTGATTTGAAGATTCATGCTACCAACGAACACACAAAGAAGCATAATAGGTTTCTTCTGAGTGGGATTAAACTGCTCTCTCCTGCTCCTCCTCCTCCTCCTCCTGCCATCAACAAGGGTAGTTTGGTAATTACAAATAATGAAGAAGTTGGTAGTTTCACCATATCAGAGTACTTGATAAACACTATCCCTGGTTGGAAGTTTGAAGATTTCATTGATTCCTCTTCTTCTGTTGGTGAAGATACTACCTTGTTAGTGCATGATGGTGCTTATATAGATCAAGAAAAATTTCTGGTTCCTCAAGCACCACAGTCTTCTTTTTATTATTCTGATAAAATGGATAGCAGATCATCAGAAACAATCAAGGAAGCCAACCCTCTCAAATTATTCAGCAGCAGCAGCAGCTTTGGGGATGATCATATCATGAAAGTTCCACAGATAATAAGAAGACCTCCCAAATAA 705 0.4099 MKIQCDVCHKQQASLFCTADEAALCSACDHCIHHANKLASKHLRFSLNDANFPNNLPLCDICHERKGFVFCQEDRVILCKECDLKIHATNEHTKKHNRFLLSGIKLLSPAPPPPPPAINKGSLVITNNEEVGSFTISEYLINTIPGWKFEDFIDSSSSVGEDTTLLVHDGAYIDQEKFLVPQAPQSSFYYSDKMDSRSSETIKEANPLKLFSSSSSFGDDHIMKVPQIIRRPPK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05866 234 Gene3D Classic Zinc Finger 1 100 - -
Trre6g05866 234 CDD Bbox1_BBX-like 5 47 - -
Trre6g05866 234 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Trre6g05866 234 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre6g05866 234 Pfam B-box zinc finger 55 94 IPR000315 GO:0008270
Trre6g05866 234 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Trre6g05866 234 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre6g05866 234 SMART bboxneu5 54 101 IPR000315 GO:0008270
Trre6g05866 234 CDD Bbox1_BBX-like 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05866 Trre-Chr6 59159012 59159905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05866 1 168 C2C2-CO-like Transcription Factor Family AT1G75540 46.789 2.44e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g05866 zf-B_box 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05866 - - tpra:123898686 310.457