Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05864 ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACCGACAAGTAACTTATTCAAAACGAAGGAATGGTCTTTTCAAGAAAGCAAATGAGCTTACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACCGGCAAGCTTCATGAGTACATTAGCCCCTCAACCTCAACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTAGGAATTGATCTCTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAGCTGAAAGATGTGAATAGGAATCTTCGCAAGGAGATTAGGAAGAGGATGGGAGCTGATTGTCTGAACGATCTGAGCATGGAAGAGCTGAGGCTACTAGAGGAAGAAATGGACAAATCCGTCAAGATTATTCGTGAGCGTAAGTTTAAGGTGATTTCAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTATGAAATGATGGACAATGGAGGAGATTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCGCGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAACCCCCACAGCCACAATGGAGCACCTCCTGCTGCCTCTGATCTCACTACTTACCCTTTACTTTTCTAG 699 0.422 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRKRMGADCLNDLSMEELRLLEEEMDKSVKIIRERKFKVISNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRYEMMDNGGDYESVIGFSNLGPRMFALSLQPTHPNPHSHNGAPPAASDLTTYPLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05864 232 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g05864 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g05864 232 Coils Coil 77 107 - -
Trre6g05864 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Trre6g05864 232 Coils Coil 152 172 - -
Trre6g05864 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Trre6g05864 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Trre6g05864 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 FunFam MADS-box transcription factor 16 13 97 - -
Trre6g05864 232 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre6g05864 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre6g05864 232 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05864 Trre-Chr6 59147047 59149795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05864 1 231 MADS-box Gene Family AT3G54340 56.466 2.79e-95 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre6g05864 K-box 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05864 K09264 - gmx:547720 399.053