Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05860 ATGACGAGGCGTAGTGGAGGAGGAATGAATTGTCAGGATTGTGGGAACCAAGCAAAAAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACACATGTTAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAAAGACAACAACAACATCATCTCTCTATGTTACAACACTTTCATTGTCCTAAACGACACTCCCACACTCATCATCAACAACAACAACAAGGGTTTGAGTTGGGACAATTTCCACCTGAAGTGAGTTCTCCAGGAGTAACGTTTAAGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGATCAATGTGCATATCAAACGGCTGTGAACATAGGAGGACATGTTTTCAGAGGAATTCTTTATGATCAAGGTCCATCAAGTCTTTACACTGCACCTATTATTCATGAAGGTTCTTCTGGTGGAGGTCATCATCATCAACCTCAACAACTTGATTTCTTAACTGCTGCAACAACAGCTACAACAACCACCGGTATCTCGTTCGACCCTTCGCTTTATTCCGCTCCGCTAAATGCTTTCATGGCTGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTGA 627 0.4274 MTRRSGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPASKRRERQQQHHLSMLQHFHCPKRHSHTHHQQQQQGFELGQFPPEVSSPGVTFKCVRVSSLDGPDHDQCAYQTAVNIGGHVFRGILYDQGPSSLYTAPIIHEGSSGGGHHHQPQQLDFLTAATTATTTTGISFDPSLYSAPLNAFMAAAGTQFFHPQHPN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05860 208 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 191 IPR007818 GO:0003700|GO:0006355
Trre6g05860 208 NCBIfam LRP1 C-terminal domain 89 139 IPR006511 -
Trre6g05860 208 NCBIfam putative zinc finger domain, LRP1 type 10 52 IPR006510 -
Trre6g05860 208 Pfam Domain of unknown function (DUF702) 8 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05860 Trre-Chr6 59106694 59107647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05860 7 204 C2H2 Transcription Factor Family AT1G75520 46.559 1.44e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre6g05860 DUF702 2.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05860 - - tpra:123898648 353.214