Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05859 ATGTTAATAATGACGAGGCGTAGTGGAGGAGGAATGAATTGTCAGGATTGTGGGAACCAAGCAAAAAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACACATGTTAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAAAGACAACAACAACATCATCTCTCTATGTTACAACACTTTCATTGTCCTAAACGACACTCCCACACTCATCATCAACAACAACAACAAGGGTTTGAGTTGGGACAATTTCCACCTGAAGTGAGTTCTCCAGGAGTAACGTTTAAGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGATCAATGTGCATATCAAACGGCTGTGAACATAGGAGGACATGTTTTCAGAGGAATTCTTTATGATCAAGGTCCATCAAGTCTTTACACTGCACCTATTATTCATGAAGGTTCTTCTGGTGGAGGTCATCATCATCAACCTCAACAACTTGATTTCTTAACTGCTGCAACAACAGCTACAACAACCACCGGTATCTCGTTCGACCCTTCGCTTTATTCCGCTCCGCTAAATGCTTTCATGGCTGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTGA 636 0.423 MLIMTRRSGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPASKRRERQQQHHLSMLQHFHCPKRHSHTHHQQQQQGFELGQFPPEVSSPGVTFKCVRVSSLDGPDHDQCAYQTAVNIGGHVFRGILYDQGPSSLYTAPIIHEGSSGGGHHHQPQQLDFLTAATTATTTTGISFDPSLYSAPLNAFMAAAGTQFFHPQHPN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05859 211 Pfam Domain of unknown function (DUF702) 11 143 - -
Trre6g05859 211 NCBIfam LRP1 C-terminal domain 92 142 IPR006511 -
Trre6g05859 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 194 IPR007818 GO:0003700|GO:0006355
Trre6g05859 211 NCBIfam putative zinc finger domain, LRP1 type 13 55 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05859 Trre-Chr6 59106694 59107656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05859 2 207 C2H2 Transcription Factor Family AT1G75520 45.882 1.59e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre6g05859 DUF702 2.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05859 - - tpra:123898648 355.91