Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05858 ATGCATTCTTCACTTTTTCATTCATTATATGTAACTTTACACTTTGAAAATTCATATGAAAATTTAATTCTTTCCATAATGGACCTGCTACGATCAGAACCTATGCAACTTGTTCAATTAATCATTCTAATTGAATCAGCTCATCGATCCATCTCTTACCTTGGTGATCTCAGTCTTTTTCAATTCAAAGATCTTAATGAAGATAAAAGTCCATTCCAACGAACTTACGCTTCTCAGGTTAAAAGATGTGGGGAAATGACACGTACATTACGATTATTTAAGGAACAAATGATGAAGGCAGGTATATCTCCCCCAACACAGTCAACAAGAAACAATGGTCTTGATCTAGAAAATTTGGAGATTAGATTGGCAGAACTTGAAGCTGAGCTACTCGAGATTAACACAAACAACGAGAAGTTGCAACACACTTACAATGAGCTTGTAGAGTATCAGCTTGTGTTAGAGAAGGTTGGAGAGTTTTTCTCTTGA 489 0.3538 MHSSLFHSLYVTLHFENSYENLILSIMDLLRSEPMQLVQLIILIESAHRSISYLGDLSLFQFKDLNEDKSPFQRTYASQVKRCGEMTRTLRLFKEQMMKAGISPPTQSTRNNGLDLENLEIRLAELEAELLEINTNNEKLQHTYNELVEYQLVLEKVGEFFS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05858 162 PANTHER VACUOLAR PROTON ATPASES 29 161 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre6g05858 162 Pfam V-type ATPase 116kDa subunit family 53 161 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre6g05858 162 Coils Coil 109 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05858 Trre-Chr6 59097088 59098662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05858 27 162 Primary Pumps ATPases(2) AT4G39080 64.706 1.23e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05858 K02154 - gmx:100805813 209.92