Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05857 ATGGAACAAGATGCAACAACATGTTCAGTAAAACAGATTAAATTGGGGTTTATAAGTGGTCTTGTCACAAGGGAAAAATCTATTCCTTTTGAAAGAATTTTATTTCGTGCAACTAGGGGAAATGTGTTTCTAAAGCAAGCTATTGTTGATCATCATGTTCAAGATCCTTTGTCAGGAGATAAGTTAAAGAAGGAAAAATCCATTTATCGCATCCTCAATATGCTAAGCATTAATGTGACAAAAAAATGTCTCCTTGCAGAAGGTTGGTGTCCTATATTTGCCGCAGGACAGATTCAAAAAGTATTGTTGCAAGCAACTATGGAATGTAACTCTCCGGTGGGAACAATATTTCAAATTTTACAAACAAAGGAATTACCTCCTACCTATTTTCACACAAACAATTTTACTTCTTCTTTTCAAGAAATTGTAGATGCGTATGGAATTGCAAAGTACCAGGAAGCAAATCCAGGTGTATACACAATCATCACGTTTCCATTCCTTTTCGCTGTAATGTTTGGTGATTGGGGTCACGGCATATGCTTACTTACTACTAGCAACTTTGTATTTCATAATCAATGA 579 0.3541 MEQDATTCSVKQIKLGFISGLVTREKSIPFERILFRATRGNVFLKQAIVDHHVQDPLSGDKLKKEKSIYRILNMLSINVTKKCLLAEGWCPIFAAGQIQKVLLQATMECNSPVGTIFQILQTKELPPTYFHTNNFTSSFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLTTSNFVFHNQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05857 192 PANTHER VACUOLAR PROTON ATPASES 10 64 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre6g05857 192 Pfam V-type ATPase 116kDa subunit family 61 190 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre6g05857 192 Pfam V-type ATPase 116kDa subunit family 11 64 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05857 Trre-Chr6 59095614 59097006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05857 1 64 Primary Pumps ATPases(2) AT4G39080 54.688 1.05e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05857 K02154 - gmx:100805813 223.402