Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05856 ATGGCACTCTTCTCAATTTACACTGGATTGATATACAATGAATTCTTCTCCATTCCATTCGAACTATTTGGACCAACTGCCTATGGATGTCGTGATCCATCGTGCAGAGATTCTACTACAATAGGTTTGATAAAAGTGCGTGACACTTATCCATTTGGTGTGGATCCTAAATGGCATGGTACTCGGAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTTTACTCGGAGTATCCCAAATGAATCTTGGAATCATATTGAGTTATTTTAATGCCAAATACTTTGGAAACAACATAAATATTTGGCACCAATTTGTTCCCCAAATGATATTCTTGAATAGCCTATTTGGCTATCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACTTGTATCATGTGATGATATACATGTTCTTAAGTCCAACAGATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAAAAGTTCTTTCAAGTTATGTTACTACTTTTGGCACTCATTGCTGTACCATGGATGTTGTTACCAAAACCCTTTCTCTTGAAGAAACAACATGAAAGGCATAAAGGTCAATCTTATTCTCTCCTCTATAGTGGGGAGGATCCTCTTCAATCAGAATCACATAGCATTCACCTTGACCATAAAGAGTTTGATTTCAGCGAGATTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTCGGAGCAGTGTCTAATACAGCTTCATATCTTCGTTTATGGGCTCTCAGTCTAGCTCATTCGGAGTTATCAAGCGTTTTCTATGATAAAGTTCTTCTTCTCGCTTGGGGGTATAATAACACCATTGTTCTCATTGTTGGAGTCATTGTTTTTATATGTGCAACTGTTGGTGTTTTACTAGTAATGGAAAGTTTAAGTGCTTTCTTACATGCTTTGAGACTTCATTGGGTAGAGTTCCAAAACAAATTTTATGAGGGAGATGGTTACAAGTTCTCCCCATTTTCATTTACATCGCTTACCGACGAGGATGGACTATAG 1041 0.3727 MALFSIYTGLIYNEFFSIPFELFGPTAYGCRDPSCRDSTTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSYFNAKYFGNNINIWHQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKFFQVMLLLLALIAVPWMLLPKPFLLKKQHERHKGQSYSLLYSGEDPLQSESHSIHLDHKEFDFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNTIVLIVGVIVFICATVGVLLVMESLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFTSLTDEDGL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05856 346 Pfam V-type ATPase 116kDa subunit family 1 337 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre6g05856 346 PANTHER VACUOLAR PROTON ATPASES 1 343 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05856 Trre-Chr6 59092631 59095458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05856 1 344 Primary Pumps ATPases(2) AT2G21410 77.681 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05856 K02154 - gmx:100805813 625.165