Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05847 ATGATGAAATCAGACATGGAAGTTGAGGAGAGAAAAAAGTTGAAGAAGGCAGCACATGCCAACTCCAGAAAAGGTTGTATGAGAGGTAAAGGAGGTCCTGAAAACGCAAGTTGCCCTTACAAGGGCGTGAGACAGAGAACTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCCAATCGTGGCGCTCGCCTTTGGCTTGGAACATTTAAAACATCCCGTGAAGCTGCCTTGGCTTATGACGCTGCTGCACGTAAGCTTTATGGATCAAGGGCCAAGCTCAATCGACCTGAAATCTCAATGTCTGTGAAATCTCGGGGTCAACAATCTCTCCCTGACCCTCAAATTGTCAAAATGGAAGATCCGCACCCATCTCAAATTAATCACAACGCAGATATGGTCATGAGTTCTGATTTCAATACCAACCCTAACCCTACAGTACCAATGGCTTCTCAACCATTACACAACAACGACTGTGCGCCCTCTTTACCCTTGGATAGCAACCCTAATCCAAGTGATCCAACCTTTGAGGATTTTTTGCCATCTCTAGAAACAATGAATGGTGGTTTTTCAAGTTTAAGTGATTCCTTATGGCCAGATGATGCCATGCCAATAGATTTTCCTATTAACTATGCAAATTCTGAGATTTTTGTGGAGGCAAACATGGCAGATGGAAATGTTTGGGACTCATTGCAAACTCCATGGTCGATGTAA 711 0.4388 MMKSDMEVEERKKLKKAAHANSRKGCMRGKGGPENASCPYKGVRQRTWGKWVAEIREPNRGARLWLGTFKTSREAALAYDAAARKLYGSRAKLNRPEISMSVKSRGQQSLPDPQIVKMEDPHPSQINHNADMVMSSDFNTNPNPTVPMASQPLHNNDCAPSLPLDSNPNPSDPTFEDFLPSLETMNGGFSSLSDSLWPDDAMPIDFPINYANSEIFVEANMADGNVWDSLQTPWSM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05847 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 162 - -
Trre6g05847 236 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Trre6g05847 236 MobiDBLite consensus disorder prediction 1 38 - -
Trre6g05847 236 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Trre6g05847 236 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Trre6g05847 236 MobiDBLite consensus disorder prediction 1 16 - -
Trre6g05847 236 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Trre6g05847 236 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Trre6g05847 236 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Trre6g05847 236 SUPERFAMILY DNA-binding domain 39 94 IPR016177 GO:0003677
Trre6g05847 236 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Trre6g05847 236 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05847 Trre-Chr6 59021819 59022529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05847 13 97 AP2-EREBP Transcription Factor Family AT1G75490 82.353 1.93e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05847 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05847 - - gmx:100790057 255.758