Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g05845 | ATGATGAAATCAGACATGGAAGTTGAGGAGAGATTTTTTTTGAAGAAAGTGGCACATTCCAACTCTAGAAAAGGTTGTATGAGAGGTAAAGGAGCCCCTGAAAATGCAAGTTGCACTTACAAGGGCGTGAGACAAAGAACTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCCAATCGTGGCGCTCGCCTTTGGCTTGAAACATTTAAAACGTCTCGTGAAGCTGCCTTGACTTATGACATTGTTGCACGTAAGCTTTATGGGTAG | 267 | 0.4307 | MMKSDMEVEERFFLKKVAHSNSRKGCMRGKGAPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLETFKTSREAALTYDIVARKLYG | 88 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g05845 | 88 | Pfam | AP2 domain | 39 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | SMART | rav1_2 | 39 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | PRINTS | Ethylene responsive element binding protein signature | 62 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | CDD | AP2 | 38 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | Gene3D | AP2/ERF domain | 39 | 88 | IPR036955 | GO:0003700|GO:0006355 | |
Trre6g05845 | 88 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 15 | 88 | - | - | |
Trre6g05845 | 88 | SUPERFAMILY | DNA-binding domain | 39 | 88 | IPR016177 | GO:0003677 | |
Trre6g05845 | 88 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 88 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g05845 | Trre-Chr6 | 59013612 | 59013878 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g05845 | 15 | 88 | AP2-EREBP Transcription Factor Family | AT1G75490 | 81.081 | 4.12e-41 | 132 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre6g05845 | AP2 | 2.7e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g05845 | - | - | tpra:123886830 | 150.984 |