Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05845 ATGATGAAATCAGACATGGAAGTTGAGGAGAGATTTTTTTTGAAGAAAGTGGCACATTCCAACTCTAGAAAAGGTTGTATGAGAGGTAAAGGAGCCCCTGAAAATGCAAGTTGCACTTACAAGGGCGTGAGACAAAGAACTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCCAATCGTGGCGCTCGCCTTTGGCTTGAAACATTTAAAACGTCTCGTGAAGCTGCCTTGACTTATGACATTGTTGCACGTAAGCTTTATGGGTAG 267 0.4307 MMKSDMEVEERFFLKKVAHSNSRKGCMRGKGAPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLETFKTSREAALTYDIVARKLYG 88
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05845 88 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Trre6g05845 88 SMART rav1_2 39 88 IPR001471 GO:0003700|GO:0006355
Trre6g05845 88 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Trre6g05845 88 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Trre6g05845 88 CDD AP2 38 88 IPR001471 GO:0003700|GO:0006355
Trre6g05845 88 Gene3D AP2/ERF domain 39 88 IPR036955 GO:0003700|GO:0006355
Trre6g05845 88 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 88 - -
Trre6g05845 88 SUPERFAMILY DNA-binding domain 39 88 IPR016177 GO:0003677
Trre6g05845 88 ProSiteProfiles AP2/ERF domain profile. 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g05845 Trre-Chr6 59013612 59013878 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05845 15 88 AP2-EREBP Transcription Factor Family AT1G75490 81.081 4.12e-41 132
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05845 AP2 2.7e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05845 - - tpra:123886830 150.984