Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05837 ATGTATCCCAACCATTCATTTTCTTCAGGGTCCTATACGGATATGTTCACCGTGAATCCTCCTCCGTTACCTCACAACTACTACAATGAATCTGTAGCAGGACAAAATGAAGCTAAGTTTATCACAGCTATGGGTGACACAGTGACTATGCAGTCCATTGATACACATTCCAATGCTTCCAACTCTAATGTAGATTTTCAGCAAAATATGCAGTGCCAAGAGTTATCTCTTAGTCTCGGCACACTATTGCCTTCTAATACATCTGTCCCTCCATTTCAATATCAGTATCAAGATACCGGTTTTGTTTCGCTTATGAATGCTTGTCTCCCAAAGGAAACTACCATATCCAATGATGATGAGTTGAAAAGTGTTGAATGTATGGCATCTATATCTTCTGGAGCCTTTCATGACATTACCAAAAGGGACAGTTTTCGCAACGCTGACCCCTCAGATCAATGCCTACAGGGTTCACAGGTTTTTCCCAACATTTTACTAAACTCCCAATATCTTAAAGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAATCCGAAAACAAAGTGCAATCGAAAAACAAGAAAAAATCTGTGACATTGGATTAGATAACTCCAAAGACAATGATGCAAAATCTTCAGCCCCTAATGATTCTAATTCCAATCCTTCTTGCGAATTATCTCCGGCAGAAAGACAAAATTTGTTGGATAAGAAGACACAGCTTTTGTCCATGTTGGATGAGGTAGATAGAAGATACAGACACTACTGCAATCAGATGCAGATTGTGGTCTCATCTTTGGACATGGTTGCTGGTTGTGGAGCAGCAGAACCATATACTACACTTGCATTGCGTACAATTTCGCGCCACTTTCGCTGCTTGCGTGATGCAATCAGCAGCCAAATTCAAGTAATTCAAAGGAGCCTTGGGGAACAAGAAGGAATTCCTCGTCTCCGGTATGTTGATCAACAGCTTAGAAAACAAAAGGCACTTCAGCATCTCGGTGTTATGCGACAAGCTTGGAGACCTCAGAGAGGACTTCCCGAGAACTCTGTCTCAATACTACGTGCTTGGCTCTTCGAACATTTTCTTAATCCTTACCCCAAGGATTCGGAGAAAATAATGCTAGCTAGGCAGACTGGTTTGACAAGGAATCAGGTGGCGAATTGGTTCATTAATGCACGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAAATGAAGTGCAATTTTTCATCTGAAAATAGACTACAAGGTAAAAGAAATTATACTGAACAAGAGATTGATGATAAATCAGAACAAGAGTCACAGGACAATGTACAAATAATTACTAGTGATAGTGTACAAGCATATTCCACTAAAGAACATGTGGAAAAAAATGTGATATTGGATTATGATAACGAAAGGTTGAGCGTGAAAAATGGCTTTTATTCAGAAATAGCTTGTGATAATGCCACATATGATTTATCAGAGTTTGGTGGTGGCCACCACCACCAGCAACACAATGTGTCTCTTGCATTGGAGTTGAGGAACTGTGAAAGCGATGTATTAGCCATATCTGATGATACCATTCATAAAAGACATAATAATAATAATAATAATCAAATATTGGCTTCTTCTTCTTCTTCACAGAATAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGACAATACTCATCTGTTGCATGAGTTTGTTGTATGA 1752 0.391 MYPNHSFSSGSYTDMFTVNPPPLPHNYYNESVAGQNEAKFITAMGDTVTMQSIDTHSNASNSNVDFQQNMQCQELSLSLGTLLPSNTSVPPFQYQYQDTGFVSLMNACLPKETTISNDDELKSVECMASISSGAFHDITKRDSFRNADPSDQCLQGSQVFPNILLNSQYLKATQELLDEIVNVRIRKQSAIEKQEKICDIGLDNSKDNDAKSSAPNDSNSNPSCELSPAERQNLLDKKTQLLSMLDEVDRRYRHYCNQMQIVVSSLDMVAGCGAAEPYTTLALRTISRHFRCLRDAISSQIQVIQRSLGEQEGIPRLRYVDQQLRKQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMKCNFSSENRLQGKRNYTEQEIDDKSEQESQDNVQIITSDSVQAYSTKEHVEKNVILDYDNERLSVKNGFYSEIACDNATYDLSEFGGGHHHQQHNVSLALELRNCESDVLAISDDTIHKRHNNNNNNQILASSSSSQNSTDLLDYHFTDSGKQQHRFDNTHLLHEFVV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05837 583 SMART prehox3 158 299 IPR006563 -
Trre6g05837 583 CDD homeodomain 340 401 IPR001356 GO:0003677
Trre6g05837 583 MobiDBLite consensus disorder prediction 202 227 - -
Trre6g05837 583 SMART HOX_1 340 404 IPR001356 GO:0003677
Trre6g05837 583 Gene3D - 337 414 - -
Trre6g05837 583 ProSiteProfiles 'Homeobox' domain profile. 337 400 IPR001356 GO:0003677
Trre6g05837 583 Pfam Associated with HOX 163 298 IPR006563 -
Trre6g05837 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 437 - -
Trre6g05837 583 Pfam Homeobox KN domain 357 396 IPR008422 GO:0003677|GO:0006355
Trre6g05837 583 MobiDBLite consensus disorder prediction 207 227 - -
Trre6g05837 583 SUPERFAMILY Homeodomain-like 341 406 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05837 Trre-Chr6 58956089 58958247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05837 35 422 Homeobox Transcription Factor Family AT1G19700 47.356 1.68e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre6g05837 POX 7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05837 - - gmx:100791641 676.396