Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05836 ATGACTCATCATAATCAATTTGAGAACCAAGAGCTACTAGGTGGTGGTGGTGGTTATGTTTCATCTTCTTTAAGGAGCAACAACAATGCATCATCATATCATGAATCACTTGGAACATTTTCTAACAACATTGAACTAACACAAGGTACTGAGATGAGTCACACAAGACATTTAATGGATCTACTTGGAGCAGCAAATGAGAACAATCACCAAACACAACAAGGTCTATCACTTTCTTTAGGTTCTCATATGCTTGTTGATGAATACAACAGAAACCGTTCCTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGTCTGGTCAAGATCAGACACGTACTGAACCTTGTAATCAACCTGTTGTGGAGAATCTAACAAGTGATTATTTTTACAGTAGTGGTGGAAGTGGAAATGGTAATGGAAATGGAAATTTTGGTTCTGGTTCTAATAACTCAACGTTGAACCGTTCTACTTCTACTTCTTATGGAGGTGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCTGTACAGTCACTTCTTCAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAGTTGTTTCATGGAAGTAGAACTGGTGCTAGAACACTCTCTTCTGAGCTCAAAGCAGAGTTAAGGATTCATGGACATTTATTGGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGTTCATTGCTTTGTTAGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCAAAGTGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTCTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTGGAGAAAAGAAAACTATTTCAAGATGTACCAAAAATCAACAGTGGATTGTCTCAACTGAGCTTATTTGAGAAAGAAAATAATAATAAACAGAATAGAATGTCTCTTCAACAACTTGGAGTTATTCAAAACCAAAGACAAGTGTGGAGACCCATTAGAGGATTGCCTGAAACTTCTGTAGCTATTCTTCGTGCTTGGTTATTCGAGCATTTTCTTCACCCCTACCCTAATGATTCTGAGAAGTTAATGCTAGCATCCCAAACAGGCTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCAAGAGTACGTCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCTGAAGATTCCAACCCACCAGCTAACAATTACATGTCAAGGGAAGATGCAACTGATTGTGTGGAAGATTAG 1359 0.3657 MTHHNQFENQELLGGGGGYVSSSLRSNNNASSYHESLGTFSNNIELTQGTEMSHTRHLMDLLGAANENNHQTQQGLSLSLGSHMLVDEYNRNRSLNQGLMINPSYFMSGQDQTRTEPCNQPVVENLTSDYFYSSGGSGNGNGNGNFGSGSNNSTLNRSTSTSYGGESFGSVIGNSRYLKPVQSLLQDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKFIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINSGLSQLSLFEKENNNKQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPANNYMSREDATDCVED 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05836 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 433 - -
Trre6g05836 452 CDD homeodomain 356 417 IPR001356 GO:0003677
Trre6g05836 452 MobiDBLite consensus disorder prediction 142 161 - -
Trre6g05836 452 SMART prehox3 166 304 IPR006563 -
Trre6g05836 452 Pfam Associated with HOX 171 303 IPR006563 -
Trre6g05836 452 Gene3D - 350 431 - -
Trre6g05836 452 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
Trre6g05836 452 SMART HOX_1 356 420 IPR001356 GO:0003677
Trre6g05836 452 ProSiteProfiles 'Homeobox' domain profile. 375 416 IPR001356 GO:0003677
Trre6g05836 452 MobiDBLite consensus disorder prediction 425 452 - -
Trre6g05836 452 SUPERFAMILY Homeodomain-like 362 423 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05836 Trre-Chr6 58948787 58950909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05836 168 435 Homeobox Transcription Factor Family AT2G16400 47.761 9.72e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre6g05836 POX 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05836 - - tpra:123893532 793.497