Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05835 ATGTCAAATTCCATGACTCATCATAATCAATTTGAGAACCAAGAGCTACTAGGTGGTGGTGGTGGTTATGTTTCATCTTCTTTAAGGAGCAACAACAATGCATCATCATATCATGAATCACTTGGAACATTTTCTAACAACATTGAACTAACACAAGGTACTGAGATGAGTCACACAAGACATTTAATGGATCTACTTGGAGCAGCAAATGAGAACAATCACCAAACACAACAAGGTCTATCACTTTCTTTAGGTTCTCATATGCTTGTTGATGAATACAACAGAAACCGTTCCTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGTCTGGTCAAGATCAGACACGTACTGAACCTTGTAATCAACCTGTTGTGGAGAATCTAACAAGTGATTATTTTTACAGTAGTGGTGGAAGTGGAAATGGTAATGGAAATGGAAATTTTGGTTCTGGTTCTAATAACTCAACGTTGAACCGTTCTACTTCTACTTCTTATGGAGGTGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCTGTACAGTCACTTCTTCAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAGTTGTTTCATGGAAGTAGAACTGGTGCTAGAACACTCTCTTCTGAGCTCAAAGCAGAGTTAAGGATTCATGGACATTTATTGGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGTTCATTGCTTTGTTAGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCAAAGTGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTCTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTGGAGAAAAGAAAACTATTTCAAGATGTACCAAAAATCAACAGTGGATTGTCTCAACTGAGCTTATTTGAGAAAGAAAATAATAATAAACAGAATAGAATGTCTCTTCAACAACTTGGAGTTATTCAAAACCAAAGACAAGTGTGGAGACCCATTAGAGGATTGCCTGAAACTTCTGTAGCTATTCTTCGTGCTTGGTTATTCGAGCATTTTCTTCACCCCTACCCTAATGATTCTGAGAAGTTAATGCTAGCATCCCAAACAGGCTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCAAGAGTACGTCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCTGAAGATTCCAACCCACCAGCTAACAATTACATGTCAAGGGAAGATGCAACTGATTGTGTGGAAGATTAG 1371 0.3654 MSNSMTHHNQFENQELLGGGGGYVSSSLRSNNNASSYHESLGTFSNNIELTQGTEMSHTRHLMDLLGAANENNHQTQQGLSLSLGSHMLVDEYNRNRSLNQGLMINPSYFMSGQDQTRTEPCNQPVVENLTSDYFYSSGGSGNGNGNGNFGSGSNNSTLNRSTSTSYGGESFGSVIGNSRYLKPVQSLLQDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKFIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINSGLSQLSLFEKENNNKQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPANNYMSREDATDCVED 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05835 456 CDD homeodomain 360 421 IPR001356 GO:0003677
Trre6g05835 456 MobiDBLite consensus disorder prediction 146 165 - -
Trre6g05835 456 ProSiteProfiles 'Homeobox' domain profile. 379 420 IPR001356 GO:0003677
Trre6g05835 456 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 437 - -
Trre6g05835 456 Pfam Associated with HOX 175 307 IPR006563 -
Trre6g05835 456 SMART prehox3 170 308 IPR006563 -
Trre6g05835 456 MobiDBLite consensus disorder prediction 429 456 - -
Trre6g05835 456 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Trre6g05835 456 SUPERFAMILY Homeodomain-like 366 427 IPR009057 -
Trre6g05835 456 SMART HOX_1 360 424 IPR001356 GO:0003677
Trre6g05835 456 Gene3D - 354 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05835 Trre-Chr6 58948787 58950921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05835 172 439 Homeobox Transcription Factor Family AT2G16400 47.761 8.92e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre6g05835 POX 2.8e-39 No_clan