Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05831 ATGGCGACTCCGGTTGAGCCACCAAATGGGATTAGAGTTGAAGGGAAACATTATTTTTCCATGTGGCAAACCCTTTTTGAGATTGATATCACATATGTGCCGATTAAGCCAATTGGTCGAGGAGCGTATGGAATTGTTTGTTCTTCTGTTAATAGAGAAACCAATGAGAAAGTTGCGATCAAGAAGATACAGAACGCGTTTGAGAATCGCATAGATGCGGTTAGAACTTTGTGTGAACTGAAACTTCTTCGACATCTTCACCATGAGAATGTTATTGCTTTGAAAAAAGACATCATGATGCCCATTCAGAGGAATAGTTTTAAGGATGTTTATCTAGTTTATGAACTCATGGACACCGATTTGCATCAGATTATTAAGTCTTCCCAATCTTTGTCTAATGATCACTGCCAATATTTCCTCTTTCAGTTGCTTCGGGGCTTGAAATATCTTCACTCAGCTAATATTCTTCATCGTGACTTGAAACCTGGCAATCTTCTGATTAATGCAAATTGTGACCTAAAAATATGTGATTTCGGGTTAGCACACACGAACTGCAGCAAGAACCAGTTCATGACGGAGTATGTTGTCACTCGGTGGTATAGGGCACCAAAACTCTTACTTTGTTGTGACAACTATGGGACATCTATTGATGTATGGTCAGTTGGATGCATCTTTGCAGAGCTTCTTGGACGAAAACCTATTTTCCCCGGCTCAGAGTGCCTCAACCAACTAAAACTTATTATCAATATCCTTGGTAGTCAAAGGGAAGAGGATATTGAATTTATTGATAATCCAAAGGCAAAGAGGTACATGATCAAATCACTTCCATATTCTCTTGGAACCTCCTTTTATAGACTTTACCCCAATGCACATCCATTGGCAATTGATCTACTGGCAAAGATGCTTGTTTTTGATCCCACGAAGAGGATTAGTGTCACGGAAGCGCTTCAGCACCCTTTCATGGCCTCTCTCTATGATCCAAATTGTGACCCTCTTGCCATCATTCCAATTGATCTTGACATTGATGAGGATCTAGGGGAAGAGGTGATAAGGGAGTTGATGTGGAAGGAAATGGTTCATTACCATCCTGAATCTGCTATGGGAAATACAGAGTTATGCTCTTAA 1125 0.4027 MATPVEPPNGIRVEGKHYFSMWQTLFEIDITYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIQNAFENRIDAVRTLCELKLLRHLHHENVIALKKDIMMPIQRNSFKDVYLVYELMDTDLHQIIKSSQSLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLAHTNCSKNQFMTEYVVTRWYRAPKLLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKRYMIKSLPYSLGTSFYRLYPNAHPLAIDLLAKMLVFDPTKRISVTEALQHPFMASLYDPNCDPLAIIPIDLDIDEDLGEEVIRELMWKEMVHYHPESAMGNTELCS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05831 374 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Trre6g05831 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Trre6g05831 374 Gene3D Transferase(Phosphotransferase) domain 1 117 347 - -
Trre6g05831 374 CDD STKc_TEY_MAPK 26 363 - -
Trre6g05831 374 SUPERFAMILY Protein kinase-like (PK-like) 31 328 IPR011009 -
Trre6g05831 374 SMART serkin_6 32 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05831 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 33 322 - -
Trre6g05831 374 Gene3D Phosphorylase Kinase; domain 1 19 357 - -
Trre6g05831 374 ProSiteProfiles Protein kinase domain profile. 32 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05831 374 FunFam Mitogen-activated protein kinase 18 127 - -
Trre6g05831 374 FunFam Mitogen-activated protein kinase 117 347 - -
Trre6g05831 374 Pfam Protein kinase domain 33 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05831 Trre-Chr6 58927432 58929328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05831 1 372 MAP Kinase Gene Family AT1G10210 83.065 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre6g05831 Pkinase 1.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05831 K20535 - gmx:100798863 684.871