Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05826 ATGGAATCAACAAATCTACATCATCTCCAAGACCAACAACATCCTCCTCCTGTTGGAGGAACCACCACCACCCACTCTTGGACCCCAAACTTCACTTTGAATAATGCTGCAGGTAGCTTCAACTCAAATAACCTCCAAGAAGATAATAATCCTAGATCACATTCAAGATCATCTTTAACACACAACAAGAACCATATGATTCAAGATTTAGGTTATCATCATCATCATGATCAGTGGACAAGTGCTGCTGGTGCTGCAGAAGAGAGCTGCTTAAACAGAAACCATGAGTCAGGTCATAACAACTTAGATTCACATGAGTTTTCCAAGAATAGTAGTGCTAGTACTATTAAGGAAGAGATCTCATTTGCTAATTTCCCCAAATTCACTGAAATGCTTAATTACACTTCCAACTTAGAAAACTATCCAATACTTCCATCAACTACAACACAGATGAAGAATATTAATAATGATGAACACAAAGATATGAATTCTCTCATGCTCAAGACCCTTTTTACTGCTGGAGATTTTTATAATGCTCAAAATTATCCAAATGCTGGAGGCACTAGTAACAACAATATTAGTAGCCAGATTCACCCAAGTATAAATATCTCAAACTTGAATCATTACTTGTCTTCTTCGCCCGGTTCATCCATCTTGGATATCAACATGCAGTCATTAGATCTATTAACTAATTCACAAGATCATCATAATCATCTTGCTAGATTTACTACTACTCATCATGATCAAGACAATCTTTCTTTTCATCTTCATCCTATGCATCAACCCACCAACATGTCATCTTCTACTAACTCTATTAATAAGCCATTGGTATTGAGCAATGTTGAAACAAAGAGAGCATGCACCTTGATGGAGTCAAAGGCTTCTCAATCTCAAACAGCATTGAAAAAACCACGATCTTCATCAGAACCACGCCCTTCATGCCCACCTTTTAAGGTTAGGAAAGAGAAATTAGGGGATAGGATTGCATCTCTTCAACAGTTGGTGGCTCCTTTTGGAAAGACAGACACTGCATCCGTACTCATGGAAGCTATTGGATACATCAAGTTCCTTCAAGGCCAAGTCGAGACACTAAGTGTTCCCTATATGAAGTCATCACAGAACCAAAACAACAGAGTGATGCAAGGGAGTTCAGCCACAAGTGACACAAATGTTGAACCAAAGCAAGATCTGAGAAGTCGAGGCCTCTGTCTAGTGCCATTGTCATGCATGTCATACATAGCAGGTGATGGTTGTCCTGAGGTGTGGCAGGAACGTCCAAACTTTGGTGGACCAGCTTAA 1299 0.3941 MESTNLHHLQDQQHPPPVGGTTTTHSWTPNFTLNNAAGSFNSNNLQEDNNPRSHSRSSLTHNKNHMIQDLGYHHHHDQWTSAAGAAEESCLNRNHESGHNNLDSHEFSKNSSASTIKEEISFANFPKFTEMLNYTSNLENYPILPSTTTQMKNINNDEHKDMNSLMLKTLFTAGDFYNAQNYPNAGGTSNNNISSQIHPSINISNLNHYLSSSPGSSILDINMQSLDLLTNSQDHHNHLARFTTTHHDQDNLSFHLHPMHQPTNMSSSTNSINKPLVLSNVETKRACTLMESKASQSQTALKKPRSSSEPRPSCPPFKVRKEKLGDRIASLQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNRVMQGSSATSDTNVEPKQDLRSRGLCLVPLSCMSYIAGDGCPEVWQERPNFGGPA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05826 432 FunFam Transcription factor bHLH123 family 318 380 - -
Trre6g05826 432 MobiDBLite consensus disorder prediction 373 392 - -
Trre6g05826 432 MobiDBLite consensus disorder prediction 291 319 - -
Trre6g05826 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Trre6g05826 432 MobiDBLite consensus disorder prediction 1 59 - -
Trre6g05826 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 371 IPR036638 GO:0046983
Trre6g05826 432 MobiDBLite consensus disorder prediction 373 395 - -
Trre6g05826 432 MobiDBLite consensus disorder prediction 291 306 - -
Trre6g05826 432 CDD bHLH_AtbHLH_like 315 365 IPR045239 -
Trre6g05826 432 Gene3D - 318 386 IPR036638 GO:0046983
Trre6g05826 432 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 114 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05826 Trre-Chr6 58879561 58884126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05826 1 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 37.876 1.71e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05826 - - mtr:25490216 611.683