Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05783 ATGCCGCCACTTTCTCCAACACCGACACCGCCAAAAAAGAAGCGAAGCCTCGCTGGAATGCCAGATCCAAATGCTGAAGTAATCGCTTTATCACCAAAAACTTTGTTAAAGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGATTCCAAAGAGAACAGAATCTGCAACTTCACCGGAGAGGACATAACATGCCATGGAAACTCCGGCAGCGAGCGACCGAAGAAATCCGCAAGAAAGTGTACGTTTGTCCAGAGCCTTCCTGTGTACACCACAATCCGTCAAGAGCGCTAGGTGACCTGACCGGAGTGAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAACGTTGTTCTAAAAATTATGCTGTGAAATCTGATTGTAAAGCACATATGAAGAGTTGTGGAAGTAGAGAATATAAATGTGATTGTGGCTCCTTGTTCGCTAGGAGGGATAGTTTTGTTACGCACAGAGCGTTCTGCGATGTAGTGTTGGCGGATGAGAGTGGGAAAGGAGGTAGCAATGTTGTTGTGGGTTCATCTGCACCGCCAACGCCTCCACTTACTCCGTCAACAATATCCGTGGCGTCTCCTCCTACTTTATCGTCTGTTCACAACTCAGATATTGCAGAAAACCCAACAAAGCTGTCAACTCCATCTTCAAACGCTTCCGCTTCTACCAGTTGTTGTTCCTCATTCAGCAGCCTCATGACAAGCTTGGCTCACTCGGATTGCCCCGCCACATCTTTCTCTGTCACAGAACCTACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACACCAACAATGATCAGTACCCTCTTCCCCACTACAGTCCTGCATTATCTGCCACTGCCTTACTCCAAAAAGCTGCTCAAATGGGTTCAAGTTCATCCAACTCATCCTTGCTTCATGCTTTAGGCTTGAAAGAAAACAGTGTCAGTATTAGCAGCACCAAAACAGATAAATGGAATGGCAATGGTAATGTAAAACAAGAGAATGAACTTGTGCCAGATTACCTTGGGCTTGGACTACTTCCCTGTGGGAATGAGATTATGGGCTCATCAGGCCAACCCATGACCCGTGATCTTCTTGGTCTAAGCATGGGATTGGGTAGACGGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGCGGGAACTTTGATTCATCCACGTAG 1203 0.4613 MPPLSPTPTPPKKKRSLAGMPDPNAEVIALSPKTLLKTNRFVCEICNKGFQREQNLQLHRRGHNMPWKLRQRATEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKSDCKAHMKSCGSREYKCDCGSLFARRDSFVTHRAFCDVVLADESGKGGSNVVVGSSAPPTPPLTPSTISVASPPTLSSVHNSDIAENPTKLSTPSSNASASTSCCSSFSSLMTSLAHSDCPATSFSVTEPTTLSLFTPLYLSNNNTNNDQYPLPHYSPALSATALLQKAAQMGSSSSNSSLLHALGLKENSVSISSTKTDKWNGNGNVKQENELVPDYLGLGLLPCGNEIMGSSGQPMTRDLLGLSMGLGRRDDDLSALLTSFGGNFDSST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05783 400 MobiDBLite consensus disorder prediction 176 228 - -
Trre6g05783 400 MobiDBLite consensus disorder prediction 198 228 - -
Trre6g05783 400 SUPERFAMILY beta-beta-alpha zinc fingers 40 137 IPR036236 -
Trre6g05783 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Trre6g05783 400 FunFam protein indeterminate-domain 12-like 20 88 - -
Trre6g05783 400 SMART c2h2final6 117 137 IPR013087 -
Trre6g05783 400 SMART c2h2final6 41 63 IPR013087 -
Trre6g05783 400 SMART c2h2final6 82 112 IPR013087 -
Trre6g05783 400 Gene3D Classic Zinc Finger 104 177 - -
Trre6g05783 400 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g05783 400 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Trre6g05783 400 Gene3D Classic Zinc Finger 41 86 - -
Trre6g05783 400 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 375 IPR031140 -
Trre6g05783 400 Pfam Zinc-finger double-stranded RNA-binding 41 63 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05783 Trre-Chr6 58597354 58599674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05783 12 394 IDZ Gene Family AT3G50700 48.551 1.14e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g05783 zf-C2H2_jaz 4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05783 K25869 - psat:127082208 558.91