Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05755 ATGCCGCCGCTAGGGGTGCAACTCAGCATTCAAGACCACCATGTGGTGATGGACAATGGCATACTCAAAGTCACTTTATCAAATCCTGAGGGAATTGTCACTGGAATAGAGTATAATGGGATTGACAACTTGCTTGAAGTGTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGAATATTTGATGTGATAAAAGGGAGCACATTCAAAGTTATATTGGAAGATGAGGATCAAGTGGAGTTATCCTTCTCCAGGAATTGGGATGCTTCCATGGAGGGCAAGATGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCATCCGGCTTCTACTCATATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAGAGGAATATGCCTCTTCCAGATGACAGAGTACCCCCAAGAGGCCAAGCACTTGCCTATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGCGATAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCAGTTGGATTCTGGCTTATTACGCCTAGTAATGAATTTCGTTCGGGTGGACCTGTCAAACAAAACTTAACTTCCCATGTGGGACCTACCACGCTTGCTGTTTTTCTCAGTGCTCATTATAGTGGAGAAGATTTAGTGCCTAAGTTCAAAGCTGGTGAGGCTTGGAAAAAGGTTTTTGGCCCAGTTTTTATCTATTTCAATTCTCCATATTATGGCGGTGATCCAATTAAGCTATGGGATGACGCTAAGCTTCAGATGTTAATGGAAGTTCAAAGTTGGCCCTACAATTTTCCCGAATCAGATGATTTTCCGAAATGGGACGAACGTGGTAATGTTAGTGGCAGACTATTGGTTAAAGAGAGGTATTTAGACGATGATGACTATTTATCAGCGAAATGTGCTTATGTTGGCTTGGCTACACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGACTCAAGCAGACGATGATGGCTATTTCTCCATCAGCAATATATGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATCGGTGATTATAAATATGATGTAGTAGTTAGCATAACAGAAGGTTGTGACATAGACATTGGTGACCTTGTTTATGAGCCACCAAGAGATGGCCCAACATTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAATTTAGGCAATATGGGATATGGGAGAGATATGCAGAACTATACCCTGACAAAGATTTGGTCTACACAATTGGTGTTAGTGACTACACAAAAGATTGGTTCTTTGCTCAAGTTACTAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAAAGGTAGCTATAAACTTCGAGTGGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTTAATGATCCCAAAGCAAATCGGCCTTTATTTTCAAGTGGATTGATAGGAAAGGATAATTCAATTGCTAGGCATGGAATTCATGGACTTTATTGGCTTTATAATGTGAACATACCTGGTAATTTACTTGTTGAAGGAGATAATAATACCATCTTTTTGACACAATCAAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCACCAACTTCTAATTTCAATAAGAAAATTTGA 1938 0.3968 MPPLGVQLSIQDHHVVMDNGILKVTLSNPEGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGIFDVIKGSTFKVILEDEDQVELSFSRNWDASMEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYFNSPYYGGDPIKLWDDAKLQMLMEVQSWPYNFPESDDFPKWDERGNVSGRLLVKERYLDDDDYLSAKCAYVGLATPGDVGSWQRECKNYQFWTQADDDGYFSISNICAGDYNVYAWVPGFIGDYKYDVVVSITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDKDLVYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKKGSYKLRVALASATYSELQVRVNDPKANRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGNLLVEGDNNTIFLTQSRGNGPFQAIMYDYIRLEGPPTSNFNKKI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05755 645 Gene3D - 4 307 IPR014718 GO:0030246
Trre6g05755 645 SUPERFAMILY Galactose-binding domain-like 441 634 IPR008979 -
Trre6g05755 645 Gene3D - 333 430 - -
Trre6g05755 645 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Trre6g05755 645 CDD RGL4_C 446 634 - -
Trre6g05755 645 SUPERFAMILY Galactose mutarotase-like 11 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre6g05755 645 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
Trre6g05755 645 SUPERFAMILY Starch-binding domain-like 371 430 IPR013784 GO:0030246
Trre6g05755 645 CDD RGL4_M 334 434 IPR029413 -
Trre6g05755 645 Pfam Polysaccharide lyase family 4, domain III 444 633 IPR029411 -
Trre6g05755 645 Gene3D - 442 634 - -
Trre6g05755 645 CDD RGL4_N 8 301 - -
Trre6g05755 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 637 - -
Trre6g05755 645 FunFam Rhamnogalacturonate lyase B 331 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05755 Trre-Chr6 58414079 58418901 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05755 1 636 Polysaccharide Lyase AT1G09890 71.473 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05755 K18195 - gmx:100793563 1225.31