Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05753 ATGAACTTCATTAATCTTTTCATGTTTTTTATGATGTTACAATTCATCTTGTTTCTTGGTTGTAGTAGCATTGATTCAGGGGTGCGATTGGATATTCAAGAAAAACATGTGATTATGGATAATGGCATAGTAAAAGTGAATTTATCAAAACCAGAAGGATTTGTCATTGGAATTCAATATAATGGACTTGATAATTTGCTTGAAGTTCTTAATCCCGAATTTGACAGAGGGTATTGGGATATTGTATGGGACCAAGGTGGAAAAAATAGAACAAAAAAAGGTGCAAAGGGAAAGGGTAAACTCGACAGGTTGGATACCACAAATTTGACGGTGATAGTAGAAAATGAAGAACAAGTAGAACTATCTTTCACTAGAACATGGAATTTGTCTCTTGAAGGAAAGCTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTTTATACATATGCAATTTATGATCATTTGAAGGAATGGCCTGCATTTGATCTTGACAATACTAGAGTTGCATTCAAACCTAGGAAAGACAAGTTCAACTACATGGTTATAGCGGACGACAGACAAAGATTTATGCCATTACCTGATGATCGATTACCGGGAAGAGGCCAAGTTCTGGCATATCCTGAGGCTGTCCGCCTTGTCAATCCGGTGGAGCCGGAGTTTAAAGGAGAGGTGGATGATAAATATGAGTACTCAGTTGAGAGTCGAAACAACCATGTTCATGGTTGGATTTCCATTAATTCATCGGAATCTACTGGATTCTGGCTAATTACGCCAAGCTATGAGTTCAGATCTGCTGGCCCCTTAAAACAATATCTTGCTTCCCACACCGGGCCAACCATGCTCTCCGTATTTCATAGCACACATTATTCAGGGATAGATCTAATAATGAAATTTGGAGCCAATGAGCCGTGGAAGAAAGTCTTTGGGCCTATATTCATATACCTTAATTCCAAGTCTGGTGGGCTTAGCCCAATCAGACTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAATTGAAAGCTGGCCATATACATTCCCTGCTTCTAAGGACTTTCTTTCATCTGCCCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGTGATAGGTACATAAGTGACGCATTCGTCCCAGTGAGTGGTGGTTGTGTTGGATTAGCTCCCCCAGGAGATGTTGGATCTTGGCAAAGAGAGTACAAGGGTTATCAATTTTGGACTATTACCGATGATGAAGGCTATTTTTCAATAATTAACATACGTCCTGGTGAATATAATCTTTATTCATGGGTCACTGGATTCATTGGCGATTATCAATATAAAAATGTCATTAACATAACCTCAGGTTGTGAAATTAAGGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATCGGCATTCCTGATCGAACAGCTGCCGAGTTCTATGTTCCTGATCCAAATCCCTTGTACATTAACAGACTTTACATCAACCATTCAGACAGATATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTACCCAATTGAAGACCTAGTTTACAATGTTGGCATTAGTGATTACAAAAAAGACTGGTTTTTTGCTCAAGTTACCAGGAAAAAGGACAACAACACTTACCAAGGAACTACATGGCAAATTAATTTCAATATTGGTCATGTGAATACCAATGGAACCTACAAATTGCGACTAGCTCTAGCATCTGTACATTCTGCTGAGTTACAGGTTCGCATAAACAATTCAAATGCAACAAGTCCATCTTTATTTTCAAGTGGAATTATTGGAAAGGAGAATACTATAGCAAGACATGGAATTCATGGATTTTACTGGTTATTCAACATTGATGTACAAGGCACTCTTCTTGTGAAAGGAAACAATACAATCTTTCTAACACAAGCTAGCAACAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTTGAAGGACCCCCTAATATTAAATTTGATAAAAATCAAAACTAG 2028 0.3851 MNFINLFMFFMMLQFILFLGCSSIDSGVRLDIQEKHVIMDNGIVKVNLSKPEGFVIGIQYNGLDNLLEVLNPEFDRGYWDIVWDQGGKNRTKKGAKGKGKLDRLDTTNLTVIVENEEQVELSFTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPDDRLPGRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYSVESRNNHVHGWISINSSESTGFWLITPSYEFRSAGPLKQYLASHTGPTMLSVFHSTHYSGIDLIMKFGANEPWKKVFGPIFIYLNSKSGGLSPIRLWEDAKQQMVNEIESWPYTFPASKDFLSSAQRGKVEGRLLVRDRYISDAFVPVSGGCVGLAPPGDVGSWQREYKGYQFWTITDDEGYFSIINIRPGEYNLYSWVTGFIGDYQYKNVINITSGCEIKVGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPLYINRLYINHSDRYRQYGLWERYADLYPIEDLVYNVGISDYKKDWFFAQVTRKKDNNTYQGTTWQINFNIGHVNTNGTYKLRLALASVHSAELQVRINNSNATSPSLFSSGIIGKENTIARHGIHGFYWLFNIDVQGTLLVKGNNTIFLTQASNNGPFVGILYDYIRFEGPPNIKFDKNQN 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05753 675 SUPERFAMILY Galactose-binding domain-like 470 663 IPR008979 -
Trre6g05753 675 CDD RGL4_C 475 663 - -
Trre6g05753 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 33 666 - -
Trre6g05753 675 FunFam Rhamnogalacturonate lyase B 361 460 - -
Trre6g05753 675 CDD RGL4_M 364 463 IPR029413 -
Trre6g05753 675 CDD RGL4_N 36 326 - -
Trre6g05753 675 Gene3D - 471 662 - -
Trre6g05753 675 Gene3D - 141 316 IPR014718 GO:0030246
Trre6g05753 675 Gene3D - 361 460 - -
Trre6g05753 675 SUPERFAMILY Galactose mutarotase-like 41 326 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre6g05753 675 Pfam Polysaccharide lyase family 4, domain II 388 459 IPR029413 -
Trre6g05753 675 Pfam Rhamnogalacturonate lyase family 27 231 IPR010325 -
Trre6g05753 675 SUPERFAMILY Starch-binding domain-like 363 457 IPR013784 GO:0030246
Trre6g05753 675 Pfam Polysaccharide lyase family 4, domain III 473 661 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05753 Trre-Chr6 58398037 58403815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05753 26 665 Polysaccharide Lyase AT1G09890 63.608 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05753 K18195 - gmx:100786488 1122.07