Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05751 ATGGGTGAGCTTGTTTATGGGCCACCAAGAGATGGCCCTACACTGGGGGAAATAGGCACTCCTGTTCGCACAGCTGCCGAGTTCTATGTTCCTGATCCAAATTCCTTGTATGTGAACAGACTTTATGTCAACCATTCAGACAGGAAAAAGGACAACAACACTTACCAAGGAACTACATGGCAAATTAATTTCAATCTTGATCATGTGAATATCAATGGAACCTACAAATTACCACTAGCTCTAGCATCTGTACATTCTTCTGAGTTGCAGATTCGCATAAACAATTCAAATGCAACAAGTCCACCTTTATTTTCAGGCGGAGTTATTGGAGAGGTGAATACTATAGTGAGACATGGAATTCATGCATTGTACATCATTGATGTCTTGTTTCGATCCAAAAAAAGGACCCTCTGA 414 0.4082 MGELVYGPPRDGPTLGEIGTPVRTAAEFYVPDPNSLYVNRLYVNHSDRKKDNNTYQGTTWQINFNLDHVNINGTYKLPLALASVHSSELQIRINNSNATSPPLFSGGVIGEVNTIVRHGIHALYIIDVLFRSKKRTL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05751 137 Pfam Polysaccharide lyase family 4, domain III 17 124 IPR029411 -
Trre6g05751 137 SUPERFAMILY Galactose-binding domain-like 11 125 IPR008979 -
Trre6g05751 137 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05751 Trre-Chr6 58387302 58388157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05751 3 126 Polysaccharide Lyase AT1G09890 47.239 2.91e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05751 K18195 - gmx:100786488 171.014