Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05742 ATGGAATTCTATGATGAGAATTTCATGGAGGAATTAATGGCCCTAAGAAGAGAAACATATGAAATTACAAATCCAAGTCAAGAAGAAAATCAATTCTTCTCATCAACAACTAATAGCTTAAGTTTTGATAATTGTTTTGATCAAAACTCTTTATCTTATCTACCAAACTCTTCTTGTAGTCAACAACTTCCTCAAAGTTACATCAACAATGATCACTATAGTAACACTTTTAATGAAATCTATGGCTCTTTACTTGATGAATCTTCGACACCGCAGATTTTCGATTCATACTATAATAGTACTACGGACGCGCCATTTATTTCTCAAGAAGATTTTCCTTTGTCCATGATGGGAGAAGAAGAAGATCATCAAAGTTTGCTTGGTGAAGAGCTTCAGAATTTGGAGCTGCAAACAACATGCAAAATGGAGCCAACACAATCACCTGAAATGCCTATAGTTTTCAACACTGGTACTAGTTTGGAAAGAAAGAACCGAGCGAAGAAACTTCAAGGACAACCGTCGAAAAACCTAATGGCTGAGAGGAGAAGACGAAAGAGATTAAACGATCGTCTTTCGATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACCGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTCTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGACGTAAAGCCGAATGAAATCTTAATAAGAAATTCTCCTAAGTTTGAGGTGGAGAGGAGTGGAGATACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTATTGCTATCAACAGTAAACACATTAGAAGCATTAGGCCTTGAAATTCAACAATGTGTTATTAGTTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGAATTGGACAGAAGGACAATGCTGAGTTCTGAAGATATTAAACAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGATGTTTGTGA 1020 0.3657 MEFYDENFMEELMALRRETYEITNPSQEENQFFSSTTNSLSFDNCFDQNSLSYLPNSSCSQQLPQSYINNDHYSNTFNEIYGSLLDESSTPQIFDSYYNSTTDAPFISQEDFPLSMMGEEEDHQSLLGEELQNLELQTTCKMEPTQSPEMPIVFNTGTSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERSGDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELDRRTMLSSEDIKQALFRSAGYGGRCL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05742 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 233 IPR036638 GO:0046983
Trre6g05742 339 SMART finulus 177 226 IPR011598 GO:0046983
Trre6g05742 339 CDD ACT_UUR-ACR-like 265 306 - -
Trre6g05742 339 Coils Coil 210 237 - -
Trre6g05742 339 Gene3D - 160 236 IPR036638 GO:0046983
Trre6g05742 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Trre6g05742 339 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 57 334 - -
Trre6g05742 339 Pfam Helix-loop-helix DNA-binding domain 177 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05742 Trre-Chr6 58348543 58350367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05742 162 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.835 7.79e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g05742 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05742 - - cam:101489960 542.732