Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05723 ATGTTTTCCTCGCGAATTCTTTCTCTTCTCCTCATTCTCTTCTCACTACTCACAATCGTCAAATCAAACGACCGTCAAATTCTACTAAACCTAAAAACCTCCCTCCGAAATTCAAACAACACACTCTTCTTCAACTCATGGAATGAAAACAGTTCAATTTGTAGTTTCCATGGAATCACTTGCAACTCATTCAATTCCGTTACAGAAATCAACCTTCCTAACAAATCTCTCTCAGGTATTCTTCCTATAGATTCACTCTGCAATCTTCAATCTCTCACCAAACTTGAATTAGGTTTCAATCATTTCAATGGCAGAGTCAATGAAAGCCTTAGAAACTGTGTCAATTTACAGTTCTTAGATTTAGGTAACAACTTTTTCTCTGGACCTTTTCCAGATATTTCACCTCTTCATCATCTTCAATATCTCAATGTAAACAAAAGTGGTTTTTCTGGTACTTTTCCGTGGCAATCTCTGTTAAATATAACAGGTTTGTTACAGTTAAGCGTCGGTGACAATCCTTTTGATCTAACGCCGTTTCCTACAGAGGTGTTAAGTCTTAAGAAACTGAATTGGCTTTACATGAGTAACTGTAATCTTGGAGGAAAGTTACCGGTTGGACTCGGTAACTTAACAGAGTTAACTGAATTAGAATTCTCCGATAACTTTATTACCGGAGAACTTCCCGGTGATTTAGTCAATCTTAAGAAACTCTGGCAGCTTGAATTTTACAACAATTCGTTAACCGGAGAAATTCCGACCGGGTTGAGAAACCTAACCGGACTAAAAAATTTCGATGGATCAATGAATCAATTAGAAGGAAATCTCTCTGAAATAAGATTTTTAACCAATCTAGTTTCGCTACAACTCTTCGAAAATAGATTATCCGGCGAGATTCCACCGGAGTTTGGCGAATTCAAAAACCTTGTGCAATTGTCTCTCTACAGAAACAATTTAACAGGTCCAATTCCTCAGAAGATTGGTTCATGGACAGAATTTCAATACATCGACGTTTCGGAGAATTTCTTAACAGGTTCAATTCCTCCAGATATGTGCAACAAAGGAAAGTTGCTTTATCTTCTCGTGCTTCAGAATAATCTCACCGGTGAGATACCGGAAACTTACGGTACCTGTTCGAGTCTTCAAAGACTCAGAGTGAGCAGAAACTCACTCTCAGGTACCGTTCCTTCCGGTATCTGGGGATTACCGATTGTTGAAATAATTGATATCGAATCGAATCAGTTCGAAGGTTCGGTTAGTTCAGAGATCCAAAACGCGAAAAAATTGGCAAGTATATATGCAAGAAACAACAGGTTAACCGGTGAAATACCAGAAGAGATTTCAAAAACGACGTCGTTGGTTACCGTTGATCTTAGCGAGAATCAAATTTCCGGGAACATTCCAGAAGGAATTGGAGAACTTAAACAACTTAGTATACTTTATTTACAGGGAAATAAATTCTCAGGGGTAATTCCGGAATCTTTGGGTTATTGTAAATCACTCAACAACGTTGATTTGTCGAGAAATTTACTTTCAGATGAAATTCCGGCGAGTTTGGGTTTGTTACCGGCTTTGAATTCTCTGAATTTCTCTCGGAATGAACTTTCCGGTGAAATTCCGAAGAGTTTAGGTTCGCTTAAGTTGAGTCTGTTTGATCTTTCGCATAATCGCTTATCCGGTGAAATTCCACAAGCTTTAACTATTCAAGCTTACAACGGAAGTCTCACCGGAAATCCACGTTTGTGCACGCTTGATGCTATTGGTTCTTTCCAGCGTTGTTCTGAGAGAAATGGAATGTCAAAAGACGTTCGTGCCCTTGTACTTTGTTTCATAGTAGCTTTGGTTTTGGTTCTTTGTTTTTTGGGTGTTTATTTGAAATTGCAGAAAATGAAGGGGAAAGAGGAAAAAAGAGAGGGAAATAAATATGGAAGAGAACGTTCTTTGAAGGAAGAATCATGGGATGTGAAATCGTTCCACGTGTTGAGTTTTAGTGAAGATGAGATTCTTGATTCTGTTAAGCAAGAGAATCTAATAGGAAAAGGAGGTTCAGGGAATGTTTATAGAGTATCACTTGCAAATGGAAAAGAACTTGCGGTTAAGCATATATGGAACACCGATTTTGGGTCAAGGAAAAAGTCGTGGAGCAGCACGCCGATGTTGGCAAAGCGTGTCGGTGGTGGTAGTTCGAGATCAAAGGAATTTGACGCGGAGGTTCAGGCGTTGAGTTCGATAAGACATGTGAATGTGGTGAAGCTTTATTGTAGTATAACTAGTGAGGATTCAAGTCTTTTGGTTTATGAGTATTTGCCTAATGGAAGTTTGTGGGATAGGCTTCATACTAATGGAAAGATGGAGCTTGATTGGGAAACAAGATATGAAATTGCTGTTGGTGCTGCTAAAGGGTTGGAGTATTTGCATCATGGTTGTGAAAGACCTGTGATTCATAGAGATGTTAAGTCTAGTAACATTTTGTTGGATGAGTTTTTGAAACCTAGGATTGCTGATTTTGGTCTTGCTAAGATTGTTAATGCTAATGCCATTAAGGATTCTACTCATATCATTGCCGGTACTCACGGCTACATCGCTCCCGAATATGGATACACATACAGAGTGAATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTATTGATGGAGTTGGTAACAGGTAAAAGGCCAAGTGAAACAGAATTTGGAGAAAACAAGGACATAGTTAGTTGGGTTCATGGGAAGACAAGGAGCAAGGAGAAGTTTATGAGTGTGGTCGATTCGAGAATTCCGGAGATGTATAAAGAAGAAGCTTGTAAGGTATTGAGAACTGCAGTTCTTTGCACTGCAACTCTTCCAGCTATGAGACCAAGTATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGCACCTTGTAAATTGGTTGGAATTGTTATTAGTAAAGATGGGAGTGAAAAGAAAATTGAAGTCAATGACAAATGA 2967 0.3886 MFSSRILSLLLILFSLLTIVKSNDRQILLNLKTSLRNSNNTLFFNSWNENSSICSFHGITCNSFNSVTEINLPNKSLSGILPIDSLCNLQSLTKLELGFNHFNGRVNESLRNCVNLQFLDLGNNFFSGPFPDISPLHHLQYLNVNKSGFSGTFPWQSLLNITGLLQLSVGDNPFDLTPFPTEVLSLKKLNWLYMSNCNLGGKLPVGLGNLTELTELEFSDNFITGELPGDLVNLKKLWQLEFYNNSLTGEIPTGLRNLTGLKNFDGSMNQLEGNLSEIRFLTNLVSLQLFENRLSGEIPPEFGEFKNLVQLSLYRNNLTGPIPQKIGSWTEFQYIDVSENFLTGSIPPDMCNKGKLLYLLVLQNNLTGEIPETYGTCSSLQRLRVSRNSLSGTVPSGIWGLPIVEIIDIESNQFEGSVSSEIQNAKKLASIYARNNRLTGEIPEEISKTTSLVTVDLSENQISGNIPEGIGELKQLSILYLQGNKFSGVIPESLGYCKSLNNVDLSRNLLSDEIPASLGLLPALNSLNFSRNELSGEIPKSLGSLKLSLFDLSHNRLSGEIPQALTIQAYNGSLTGNPRLCTLDAIGSFQRCSERNGMSKDVRALVLCFIVALVLVLCFLGVYLKLQKMKGKEEKREGNKYGRERSLKEESWDVKSFHVLSFSEDEILDSVKQENLIGKGGSGNVYRVSLANGKELAVKHIWNTDFGSRKKSWSSTPMLAKRVGGGSSRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVNANAIKDSTHIIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPSETEFGENKDIVSWVHGKTRSKEKFMSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPSMRAVVQKLEDAAPCKLVGIVISKDGSEKKIEVNDK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05723 988 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Trre6g05723 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 768 976 - -
Trre6g05723 988 FunFam Leucine-rich repeat receptor-like protein kinase TDR 278 594 - -
Trre6g05723 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 207 962 - -
Trre6g05723 988 FunFam Probable inactive receptor kinase RLK902 21 180 - -
Trre6g05723 988 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Trre6g05723 988 FunFam Leucine-rich receptor-like protein kinase family protein 181 277 - -
Trre6g05723 988 FunFam Receptor-like protein kinase HAIKU2 654 767 - -
Trre6g05723 988 SUPERFAMILY L domain-like 275 591 - -
Trre6g05723 988 Gene3D Transferase(Phosphotransferase) domain 1 768 970 - -
Trre6g05723 988 ProSiteProfiles Protein kinase domain profile. 671 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05723 988 Gene3D Phosphorylase Kinase; domain 1 654 767 - -
Trre6g05723 988 Gene3D Ribonuclease Inhibitor 334 593 IPR032675 -
Trre6g05723 988 Gene3D Ribonuclease Inhibitor 103 331 IPR032675 -
Trre6g05723 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Trre6g05723 988 SUPERFAMILY Protein kinase-like (PK-like) 664 961 IPR011009 -
Trre6g05723 988 Gene3D Ribonuclease Inhibitor 17 102 IPR032675 -
Trre6g05723 988 SMART serkin_6 671 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05723 988 Pfam Protein kinase domain 673 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05723 988 SUPERFAMILY L domain-like 46 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05723 Trre-Chr6 58138053 58141358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05723 11 986 Receptor kinase-like Gene Family AT1G09970 59.531 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g05723 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05723 - - gmx:100779554 1499.18