Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05702 ATGGCCATCGCAACAGAGACTCAACCTCAGCCGCAACAACACACGGCTTCGGAGGTTTCAGGTTCAGCTAAGGAGCAAAGAAGGTGGACTCTAAACGATTTTGATATTGGAAAACCTCTTGGAAGGGGAAAATTCGGCCATGTCTATTTGGCAAGAGAAAAAACCAGTAATCATATTGTTGCTCTGAAAGTACTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGCCGAGAAGTTGAAATACAGAGTCATCTCCGACACCCCCATATCTTGCGCCTCTATGGATACTTCTATGATCAGAAACGAGTTTACTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCTCTTATATATTGCCATGGAAAGCATGTAATACATAGGGACATTAAACCGGAGAATCTTCTTATTGGTGCCCAGGGTGAACTAAAGATAGCAGATTTTGGGTGGTCAGTGCACACATTCAATCGCAGGCGGACCATGTGCGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTGTGGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTCCTTTGCTATGAGTTTCTTTATGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGATAATTCAAGTGGATCTCAAGTTCCCTCCTAAACCAATTGTTTCTTCTGCTGCGAAAGACCTCATCAGTCAGATGCTGGTCAAGGATTCCTCTCAAAGGCTTCCATTGCACAAACTCCTTGAACACCCTTGGATTGTTCAGAATGCAGAGCCCTCCGGTATATACAGAAGCTAG 894 0.443 MAIATETQPQPQQHTASEVSGSAKEQRRWTLNDFDIGKPLGRGKFGHVYLAREKTSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGIYRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05702 297 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 293 IPR030616 GO:0004672
Trre6g05702 297 ProSiteProfiles Protein kinase domain profile. 34 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05702 297 Pfam Protein kinase domain 36 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05702 297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Trre6g05702 297 SMART serkin_6 34 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05702 297 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g05702 297 PIRSF ILK 3 282 - -
Trre6g05702 297 FunFam serine/threonine-protein kinase Aurora-1 118 293 - -
Trre6g05702 297 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Trre6g05702 297 FunFam Aurora kinase A 26 117 - -
Trre6g05702 297 SUPERFAMILY Protein kinase-like (PK-like) 23 289 IPR011009 -
Trre6g05702 297 Gene3D Phosphorylase Kinase; domain 1 21 117 - -
Trre6g05702 297 Gene3D Transferase(Phosphotransferase) domain 1 118 294 - -
Trre6g05702 297 CDD STKc_Aurora 33 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05702 Trre-Chr6 57947131 57949405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05702 24 291 CBL-interacting serine-threonine protein kinases AT5G10930 35.636 2.55e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Trre6g05702 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05702 K08850 - gmx:100803678 591.267