Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05692 ATGTTGGCGAAGAATGGGGAACCATACACCGCGTCTGTTCTAGCAGGGTCTTTCGGGTACATTCCACCGGAATATGCATATTCAACCAGGATTGATGAGAAAGTTGATGTGTATAGCTTTGGAGTTGTGCTACTAGAGCTAGTGACAGGAAGAGAGCCTAATAATGGAGGCGAAAATGCATGCAGTCTGGTTGATTGGGCATGGCAGCATTGTAATGAAGGGAAATGCATCACTGATGCCTTTGATAAGGTTATCAGAGAAACACGTTATACATCAGAGATGACTTGCGTCTTCAAATTAGGCCTCATGTGCACAAGCACAGTACCCTCCACTAGGCCTTCCACAAAGGAGATTTTGCAAGTTCTTCGACAGTGCAGTTCAAGTTCTGCACGTAAAAGGGTGGCAACCGAGTTTGATATCACTCCTCTTCTAGGCAATACAACTTACATTTCCAGTTACAAGGACAGTAGGACAGTGAGTGAAAATGAAGAAAGCTGCTTATATAGTGTGTGA 513 0.4405 MLAKNGEPYTASVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGREPNNGGENACSLVDWAWQHCNEGKCITDAFDKVIRETRYTSEMTCVFKLGLMCTSTVPSTRPSTKEILQVLRQCSSSSARKRVATEFDITPLLGNTTYISSYKDSRTVSENEESCLYSV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05692 170 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05692 170 Gene3D Transferase(Phosphotransferase) domain 1 2 144 - -
Trre6g05692 170 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 125 - -
Trre6g05692 170 Pfam Protein kinase domain 11 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05692 170 SUPERFAMILY Protein kinase-like (PK-like) 9 130 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05692 Trre-Chr6 57899208 57899813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05692 1 144 Receptor kinase-like Gene Family AT5G25930 59.722 9.69e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g05692 Pkinase 3.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05692 - K00924 gmx:100790817 236.884