Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05674 ATGACTAGGAGGAAAGTCAAGCTTGCCTACATAACCAATGACTCAAAGAGGAGGACAACATTCAACAAAAGAAAAAAGGGTTTAATAAAAAAGGTTGATGAAATAAGCACACTTTGCGGAATCGAGGCATGTGCAATAATCTTCGGTCAAAATGATGTTCAGCCAGAGATTTGGCCATCACCGGTGGGAGTCCATACCGTGCTGTCAAGGTTTAGGGGGTTGCCCAAAACGGAACAAAGCAAAAAGATGCATAATCAAGAGAGTTTCTTGAGGGAAAAGATACAAAAGGGACAAGAACAATTGAACAAACTAAGGAATGAAAACCGAAGAAATGAACTGACCCAACTCATGTTTCAATGCATTCATGCTGGCCAGATTGTTGACAATATTGGCATGAATGATCTCAATGGTCTCTCTTCGTTGATTGATCAAAATATGAAACAAATCGAAAGGCGTATGGAAGAGATTCGAGCTGCACCCGTGGTCGAAAAGCATATGGAAGAGACGCGAGCTGCAACGGTGGTCAAAAATCGTGCTGAAAATGTGATTGGAGCTGCCCCGGTGGTCAAGAGAGAGATGTAG 582 0.4244 MTRRKVKLAYITNDSKRRTTFNKRKKGLIKKVDEISTLCGIEACAIIFGQNDVQPEIWPSPVGVHTVLSRFRGLPKTEQSKKMHNQESFLREKIQKGQEQLNKLRNENRRNELTQLMFQCIHAGQIVDNIGMNDLNGLSSLIDQNMKQIERRMEEIRAAPVVEKHMEETRAATVVKNRAENVIGAAPVVKREM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05674 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre6g05674 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre6g05674 193 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 PANTHER MADS BOX PROTEIN 3 153 - -
Trre6g05674 193 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre6g05674 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g05674 193 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g05674 193 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05674 Trre-Chr6 57790227 57790998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05674 1 157 Type I MADS-box Gene Family AT5G48670 52.229 6.85e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g05674 SRF-TF 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05674 - - tpra:123915093 241.506