Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05668 ATGGCCAAAGAAACTTCAAAATCCCTCACGTTTATGTCCTTTTTTATGTTCATGTTCATGCTCAACTTCTATTCATCCCATGGAGAACAAGAGTTCGAGCTTCTCTTATCCTTCAAAGCATCCGTCAAATTTGATCCTCTAAACTTTCTCTCCAACTGGGTCAACACTTCCTCTATTACTATCTGCAAGTGGCATGGCATAACCTGCGACAACTGGTCGCACGTTAACACCGTGTCACTCTCAGGAAAAAACATCTCCGGCGAGGTTTCCTCGTCAATTTTACAACTTCCACATGTTACACATCTCGACCTCTCCAACAACCAGCTTGTTGGAGAAGTTGTTTTCAATTCTCCGTTCCTCTCTTCACTTCTTTACCTCAATCTTAGCAACAACAACCTCACCGGTTCTTTACCACAATCCTTATTTTCATCATCGTTTATCAACCTCGAAACTCTTGATCTCTCAAACAACATGTTTTCAGGTAAAATACCAGACCAAATTGGATTCCTTTCAAGCTTAACATATATTGATCTAGGTGGCAATGTTTTAGTAGGAAAAATTCCAAATTCCATCACCAACATGACAAGTTTAGAGTACTTAACTTTGGCTTCAAACCAATTAGTGGGTGAGATTCCAACAGAGATAAGTCTAATGAAGAGGTTGAAATGGATCTACTTAGGATACAACAATCTTTCAGGTGAGATTCCAAAGAGCATTGGAAACTTACTTTCATTGAAGCACCTTAATCTTGTTTACAACAACCTCACAGGACAAATTCCTGAATCACTTGGAAACCTCACCAATCTTCAATATCTCTTTCTCTACCTAAACAAACTCACTGGCCCAATTCCCAAATCTATATTCCAATTGAAGAATCTTATTTCACTTGATCTCAGTGATAATTCTCTTTCAGGAGAGATTTCAAACCTTGTTGTTAACCTTCAAAAACTAGAGATTCTTCATCTTTTCTCAAACAACTTCACAGGTAAAATTCCAAACACTATAACATCTTTACCTCACCTTCAAATTCTTCAACTCTGGTCAAACAAATTAACAGGTGAAATTCCACAAACACTTGGCATGCACAATAACCTCACAATTCTTGACCTCTCTTCAAACAACCTCACAGGCAAAATTCCAAACAGCTTATGTGCATCTAAAAATCTTCAAAAACTTATCCTCTTTTCAAACTCTTTCAAAGGTGAAATCCCAAAAGGATTAACCTCTTGTAAAACCTTACAAAGAGTGAGACTCCAAAACAACAAATTATCTGGAAAGTTGCCATTGGAAATCACCCAATTGCCACAGATATACTTGTTAGATATCTCTGGAAACAATCTTTCTGGAAGAATCAATGATAGAAAATGGAACATGCAATCACTTCAAATGCTTAATTTGGCTAACAACAATTTCTATGGAGAATTACCAAACTCTTTTGGTAGTAACAAACTTGAAGGATTGGACTTATCACAGAATCAATTTTCTGGTTACATTCAAATTGGTTTCAAAAATTTACCAGAACTTGTTCAATTGAAACTCAACAATAACAAACTCTTTGGAAAATTCCCACAAGAACTTTTTCAATGCAACAAACTTGTTTCATTAGAATTAAGCCATAATCAGTTAAGCGGCGAGATTCCGACGAAACTCGCCGAGATGCCGGTTCTCGGTTTACTTGACTTATCAGAGAATCAATTTTCCGGTGAAATTCCAAAGAATTTAGGAAATGTTGAATCGCTTGTTGAAGTTAACATATCATATAATCATTTTCATGGAAGATTGCCTTCCACTGAAGCTTTCTTTGCAATCAATGCAAGTTCAGTCGCCGGAAATAATCTCTGTGACGGTGACGGTGATGCTTCTAACGGTTTGCCACCGTGTAAAAGAAACAATCAGATGAATTCAACTACGTTGTTTTTTTCAGTTTGTGTTGTGTTAATGGGTTTGGTGGTTTTCGTTGGTGCTGGTTTTCTCGTTGTTTTCGTGCAGAGAAGGAAGAAGAATTTTGAGGTACGAAGAGTGGTTGAAAATGAAGATGGTTCTTGGGAAGTGATTTTCTTCGATTCTACAGCGTCGAAATTTGTTACCGTTGAGGATGTTTTGTCGTCGGTTAAAGAAGGAAAAGCGATTTCAAAAGGAAGAAACTGGGTTTCGTACGAAGGGAAATGTGTGGCCAATGAAATGCGATTCGTGGTGAAAGAAATAATTGACACGAATTCTGTTTCGGTGAGTTTTTGGGATGATACGGTGACGTTTGGTAAAAAAGTGAGACATGAGAATATTGTTAAGCTTATTGGAATGTTTAGGTGTGGTAAAAGAGGGTATTTGGTTTATGAGTTTGAAGAGGGAAAAAATTTGAGGGAAATTTTGCATAATTTGAGTTGGCCAAAAAGGTGGAAAATTGCGGTGGGGGTTGCAAAAGCGATTAAGTTCTTGCATTGCGAATGTTTATGGATTGGTTTGGTTGGTGAGGTGTCACCAGATATGATTTTGGTGGACGGAAAGGGTGTTCCTCGCCTTGAACTCAACCCTCCCGGAATAGGAACACCGATTATGGATATGAAATGTTTTGTTTCTTCTTCTCACGTTGCTCCAGAGAAAAGAAATGGGAAAGATGTGACAGAAAAGAGTGAGATATATGGTTTTGGAGTTATGCTTATTGAGTTATTAACGGGAAGAAGCACCATAGACATAGAAGCAGGAAATGGTATTTATCACAAGAATAATATTGTTGAGTGGGCCCGTTATTGTTACTCTGATTGTCATCTTGACACGTGGATAGATTCTGTTATGATCAAGGGTGGAGATGTATCATCCTATCAAAACGACGTTGTTGAGACCATGAGTCTCGCCTTACACTGTACTGCAGCTGATCCCACCACTAGGCCATGCGCAAGAGATGTACTCAAAGCCCTAGCGACTGTTCATTGCAGCACAAACACTTTTTGCTGA 2952 0.3825 MAKETSKSLTFMSFFMFMFMLNFYSSHGEQEFELLLSFKASVKFDPLNFLSNWVNTSSITICKWHGITCDNWSHVNTVSLSGKNISGEVSSSILQLPHVTHLDLSNNQLVGEVVFNSPFLSSLLYLNLSNNNLTGSLPQSLFSSSFINLETLDLSNNMFSGKIPDQIGFLSSLTYIDLGGNVLVGKIPNSITNMTSLEYLTLASNQLVGEIPTEISLMKRLKWIYLGYNNLSGEIPKSIGNLLSLKHLNLVYNNLTGQIPESLGNLTNLQYLFLYLNKLTGPIPKSIFQLKNLISLDLSDNSLSGEISNLVVNLQKLEILHLFSNNFTGKIPNTITSLPHLQILQLWSNKLTGEIPQTLGMHNNLTILDLSSNNLTGKIPNSLCASKNLQKLILFSNSFKGEIPKGLTSCKTLQRVRLQNNKLSGKLPLEITQLPQIYLLDISGNNLSGRINDRKWNMQSLQMLNLANNNFYGELPNSFGSNKLEGLDLSQNQFSGYIQIGFKNLPELVQLKLNNNKLFGKFPQELFQCNKLVSLELSHNQLSGEIPTKLAEMPVLGLLDLSENQFSGEIPKNLGNVESLVEVNISYNHFHGRLPSTEAFFAINASSVAGNNLCDGDGDASNGLPPCKRNNQMNSTTLFFSVCVVLMGLVVFVGAGFLVVFVQRRKKNFEVRRVVENEDGSWEVIFFDSTASKFVTVEDVLSSVKEGKAISKGRNWVSYEGKCVANEMRFVVKEIIDTNSVSVSFWDDTVTFGKKVRHENIVKLIGMFRCGKRGYLVYEFEEGKNLREILHNLSWPKRWKIAVGVAKAIKFLHCECLWIGLVGEVSPDMILVDGKGVPRLELNPPGIGTPIMDMKCFVSSSHVAPEKRNGKDVTEKSEIYGFGVMLIELLTGRSTIDIEAGNGIYHKNNIVEWARYCYSDCHLDTWIDSVMIKGGDVSSYQNDVVETMSLALHCTAADPTTRPCARDVLKALATVHCSTNTFC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05668 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 324 623 - -
Trre6g05668 983 ProSiteProfiles Leucine-rich repeat profile. 364 386 IPR001611 GO:0005515
Trre6g05668 983 SUPERFAMILY L domain-like 49 379 - -
Trre6g05668 983 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Trre6g05668 983 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 323 - -
Trre6g05668 983 Gene3D Transferase(Phosphotransferase) domain 1 782 981 - -
Trre6g05668 983 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Trre6g05668 983 SMART LRR_typ_2 338 362 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 146 170 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 242 265 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 505 529 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 96 117 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 553 577 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 458 482 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 194 218 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 364 386 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 266 290 IPR003591 -
Trre6g05668 983 SMART LRR_typ_2 120 144 IPR003591 -
Trre6g05668 983 Gene3D Ribonuclease Inhibitor 214 309 IPR032675 -
Trre6g05668 983 Gene3D Ribonuclease Inhibitor 116 213 IPR032675 -
Trre6g05668 983 ProSiteProfiles Protein kinase domain profile. 704 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05668 983 Gene3D Ribonuclease Inhibitor 24 113 IPR032675 -
Trre6g05668 983 SUPERFAMILY Protein kinase-like (PK-like) 681 975 IPR011009 -
Trre6g05668 983 SUPERFAMILY RNI-like 283 595 - -
Trre6g05668 983 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Trre6g05668 983 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Trre6g05668 983 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Trre6g05668 983 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Trre6g05668 983 Pfam Protein kinase domain 709 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05668 983 SMART serkin_6 704 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05668 983 PANTHER UNNAMED PRODUCT 120 897 - -
Trre6g05668 983 Gene3D Phosphorylase Kinase; domain 1 689 780 - -
Trre6g05668 983 Pfam Leucine Rich repeat 96 109 IPR001611 GO:0005515
Trre6g05668 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 145 236 - -
Trre6g05668 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 780 - -
Trre6g05668 983 Gene3D Ribonuclease Inhibitor 310 619 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05668 Trre-Chr6 57749429 57752682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05668 16 972 Receptor kinase-like Gene Family AT2G25790 49.329 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Trre6g05668 Pkinase 4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05668 - - gmx:100777118 1333.93