Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05667 ATGGCAGTGAGTTCAGGATGCAAAGATGGTGGTAGCAAGATAGCTATGGACAACGGAAAGTACGTTCGGTACACGCCGGAACAAGTGGAAGCACTTGAAAGACTCTACCATGAATGTCCTAAACCCACTTCTCTCCGTCGTCAGCAGCTTATTAGAGAGTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAATCGAAGGTGTAGAGAGAAGCAGAGAAAAGAAGCGGGAAGGTTGCAAGCTGTGAACAGGAAGTTAACAGCAATGAACAAACTGCTTATGGAGGAAAATGACAGATTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTAGCCACGAAGGACACAAGTTGTGAATCCGTGGTAACGAGTGGTCAGCAGCATCCACCAAGGGATGCTAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTTTAGAACCTGCCAGGGTTGCCGAAATTCTCAAAGATAGACTTTCTTGGCATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGCAAATGGAGGAACCATTGAGTTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGCACCAGGCCGTGACTTCTGGTTGCTGCGTTTCACATCACTATTGGAGGATGGTAGTCTTGTGGTTTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTTAGAGCTGACGTGTTACCCAGCGGGTATCTGATTAGGCCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGCTCTTAGAGCCCTGGAGCGTACCTGAAGTTTTGCGCTCACTTTATGAGTCATCCATGCTACTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGAAGGCCAGCAGCACTACGTGCGCTTAGTCAGAGAATGAGCAAGGGATTCAATGAAGCTGTCAATGGCTTTACAGATGATGGATGGTCTATGTTAGAGAGTGATGGCATTGATGATGTTACTCTTCTCGTGAATTCATCGCCTAACAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGATTCTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCAGCTGCTGCCATTAAAGCCGGTCCATGTAGCTTACCAGGGGCCAGAGCAGGTAGTTATGGTGGTCAGGTTATTCTTCCATTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTACTATAGGGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTATGTAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAACTTATTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGCTTTCGCATCATACCTCTTGATTCTGCCACGGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGAAGTTGGAACCACAGGAAACAAAGCAGGCGGTGAGAATTCAGGTCATTCTTCTGGGAACACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAGCTATGGCACGACAATATGTTCGTAGCATTGTCGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCGCAGAGTCCTTTTCCGTCAGCACCTGCCACTCCTGAGGCACAAACACTTACTCGGTGGATCTGCAACAGCTATAGATTCTATCTAGGCGTAGAATTACTAAAGTGTGAAGGCAGTGAATCCATACTGAAATCCCTTTGGCATCACTCAGATGCAGTTCTGTGCTGCTCTTTGAAGGCAACACCAGTTTTTACGTTTGCGAATCAAGCTGGACTTGACATGCTTGAAACCACCTTGGTTGCACTTCAAGACATCACTCTGGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTGTGCTCTGAATTTCCACAGATAATGCAGCAGGGTTTCACGTGTATTCAAGGCGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCAGTTGCATGGAAAGTACTAAACGAAGAAGAATCGGCTCATTGCGTCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2508 0.4526 MAVSSGCKDGGSKIAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQHTQNTTLATKDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWHRDCRTVDVLNVMSTANGGTIELLYMQLYAPTTLAPGRDFWLLRFTSLLEDGSLVVCERSLNNTQNGPSMPPVPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRSLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRMSKGFNEAVNGFTDDGWSMLESDGIDDVTLLVNSSPNKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARAGSYGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSATDAASPNRTLDLASALEVGTTGNKAGGENSGHSSGNTKSVMTIAFQFAFEVHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQSPFPSAPATPEAQTLTRWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKATPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFTCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCVCFMFINWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05667 835 CDD bZIP 72 111 - -
Trre6g05667 835 Pfam START domain 159 367 IPR002913 GO:0008289
Trre6g05667 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 835 IPR044830 GO:0003700
Trre6g05667 835 Pfam MEKHLA domain 694 834 IPR013978 -
Trre6g05667 835 SUPERFAMILY Bet v1-like 158 369 - -
Trre6g05667 835 SMART HOX_1 17 83 IPR001356 GO:0003677
Trre6g05667 835 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Trre6g05667 835 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Trre6g05667 835 CDD START_ArGLABRA2_like 153 368 - -
Trre6g05667 835 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Trre6g05667 835 SMART START_1 158 368 IPR002913 GO:0008289
Trre6g05667 835 Gene3D - 12 85 - -
Trre6g05667 835 Coils Coil 85 116 - -
Trre6g05667 835 Gene3D - 192 374 IPR023393 -
Trre6g05667 835 CDD homeodomain 20 80 IPR001356 GO:0003677
Trre6g05667 835 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Trre6g05667 835 ProSiteProfiles START domain profile. 149 351 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05667 Trre-Chr6 57736061 57741167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05667 10 835 Homeobox Transcription Factor Family AT4G32880 79.450 0.0 1375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre6g05667 START 3.2e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05667 K09338 - gmx:100815727 1541.17