LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g05665	ATGGAAGCTCAAGAGTTTTTCCATACCAACTTTTGCCAAGAATTAGACAACAATTCCATAACCAACAACATTAATGTAAACACTGCTGCTTCCGACCACTTTGTAGTTGAAGATCTCTTTGATTTCTCTAATGATGATGCTGCCATTACCGACCCCGCTTTCGACGACTCTCCTCCTACCAACTCTAATGATTCTCCTCCTCCTGAAACCAACACCAATTCCAATTTTTTCCTCGATAACTCGTGCCAGAATTCTGCGGACGGCCCTTTCTCCGGCGAACTATCCGTCCCGTATGATGATCTTGCGGAGCTTGAATGGCTATCGAAATTTGCCGAGGAATCATTCTCGAGCGAGGACCTACAAAAGCTACAATTGATATCTGGTGTGAAAGCGCCAAATGACACTACATCGAAAACCAAAGACGAATCTAACTCAATATTACACCCTCAAGTGTCAGTTCCAGCCAAAGCCCGCAGTAAGCGGTCACGTGGACCTCCATGCAACTGGACTTCACGTCTTCTAGTTCTCTCTCCAACTACCACCACTACAACCACATCTTCTCATTCTGATGCCATCGCTCCACCAAAGAAACCCTCTCCAAGAAAGAGAGACACCACTGATGGAGGGGAGGGACGCAAGTGCCTTCATTGTGCCACTGATAAAACTCCTCAATGGCGGACTGGGCCATTGGGCCCAAAGACACTATGCAATGCATGTGGTGTTAGGTACAAGTCAGGCCGACTTGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTCGTGTTGACTAAACACTCCAACTCGCATCGAAAGGTGCAAGAGCTCCGGCGCCAAAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAACCTTATGTTTGATGGAGCATCCAACGGCGAGGATTACTTGATCCATCAACATGTGGGCCCTGATTTCACGCACCTAATGTAG	972	0.4733	MEAQEFFHTNFCQELDNNSITNNINVNTAASDHFVVEDLFDFSNDDAAITDPAFDDSPPTNSNDSPPPETNTNSNFFLDNSCQNSADGPFSGELSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGVKAPNDTTSKTKDESNSILHPQVSVPAKARSKRSRGPPCNWTSRLLVLSPTTTTTTTSSHSDAIAPPKKPSPRKRDTTDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHNLMFDGASNGEDYLIHQHVGPDFTHLM	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	172	192	-	-
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	47	79	-	-
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	132	211	-	-
	Trre6g05665	323	FunFam	GATA transcription factor	204	289	-	-
	Trre6g05665	323	ProSitePatterns	GATA-type zinc finger domain.	214	239	IPR000679	GO:0006355\|GO:0043565
	Trre6g05665	323	ProSiteProfiles	GATA-type zinc finger domain profile.	208	244	IPR000679	GO:0006355\|GO:0043565
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	55	79	-	-
	Trre6g05665	323	CDD	ZnF_GATA	213	260	IPR000679	GO:0006355\|GO:0043565
	Trre6g05665	323	PANTHER	GATA TRANSCRIPTION FACTOR	22	286	-	-
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	132	150	-	-
	Trre6g05665	323	Coils	Coil	272	292	-	-
	Trre6g05665	323	Pfam	GATA zinc finger	214	247	IPR000679	GO:0006355\|GO:0043565
	Trre6g05665	323	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	209	271	-	-
	Trre6g05665	323	PIRSF	Txn_fac_GATA_plant	4	305	IPR016679	GO:0003677\|GO:0005634\|GO:0045893
	Trre6g05665	323	SMART	GATA_3	208	258	IPR000679	GO:0006355\|GO:0043565
	Trre6g05665	323	Gene3D	-	209	289	IPR013088	GO:0006355\|GO:0008270
	Trre6g05665	323	MobiDBLite	consensus disorder prediction	195	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g05665	Trre-Chr6	57712179	57715070	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g05665	32	323	C2C2-Gata Transcription Factor Family	AT4G32890	49.691	4.22e-91	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Trre6g05665		GATA	1.6e-15	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g05665	-		-	mtr:11432019	516.538