Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05662 ATGGAGTCTGTTGCCTCCAATTCTAATTCAACATCATCTGATAACAATACCAATAATAACCGTCGCCGTCATTCTCGTTTCAAACATAGCCAACCAATTTCAGATAGAATAGTTAGAGCTCTCAAACATCGTCTCCGTCTCCTCCACCGTTCCGGCTCAACTTTCTTCATATTCGGCGCAACAGGAAACGTCTACACGGTAACCCTATCGTCAACTCCCTCGTGCACGTGCCCTGATCGGACAACGCCGTGCAAACACATCCTCTTCGTTATGATTCGAGTATTAGGCGTTTCACAGAACGACGCATGTGTCCGTAGAAGAAACCTTCGACCGTGTCAGCTTCAACGACTTCTTAACATGCCAACATTGTCCGAAGCGGTCGCAGGGTTTAAACTTCGACAAAGGTTTCATCAGTTGTTTTTCGAAGGAGGGACGTCGAAGAAGGAAAGTGATGTAGAGATGGAAGAAGGTTCTGCTTGTCCTGTTTGTCTTGAAGAGATGGAGAAGGAAGAGAGATTGGTGGCTTGTGGAACATGTAGGAATGTTATTCATGAAGAGTGTTTGATTAGGTGGAAGAGAAGTAGAGGAAGAAGATCAGCTAGTTGTGTGATTTGTAGGGCAAGGTGGAGGGATAGAACAGAACAAGATAAATATGTTAATTTATCTGCTTATATTAGTGAGGATGATTTGATGGCACAATCATCTGGGGGTATTTGCACTGGCTAG 726 0.4421 MESVASNSNSTSSDNNTNNNRRRHSRFKHSQPISDRIVRALKHRLRLLHRSGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVMIRVLGVSQNDACVRRRNLRPCQLQRLLNMPTLSEAVAGFKLRQRFHQLFFEGGTSKKESDVEMEEGSACPVCLEEMEKEERLVACGTCRNVIHEECLIRWKRSRGRRSASCVICRARWRDRTEQDKYVNLSAYISEDDLMAQSSGGICTG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05662 241 ProSiteProfiles Zinc finger RING-CH-type profile. 152 212 IPR011016 GO:0008270
Trre6g05662 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Trre6g05662 241 ProSiteProfiles Zinc finger SWIM-type profile. 65 95 IPR007527 GO:0008270
Trre6g05662 241 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 11 218 IPR039903 GO:0061630
Trre6g05662 241 MobiDBLite consensus disorder prediction 1 18 - -
Trre6g05662 241 Pfam Ring finger domain 159 206 IPR001841 -
Trre6g05662 241 SUPERFAMILY RING/U-box 150 214 - -
Trre6g05662 241 Pfam SWIM zinc finger 65 93 IPR007527 GO:0008270
Trre6g05662 241 MobiDBLite consensus disorder prediction 1 30 - -
Trre6g05662 241 ProSiteProfiles Zinc finger RING-type profile. 160 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05662 Trre-Chr6 57684549 57685274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05662 155 232 C3H Transcription Factor Family AT3G58720 31.325 2.18e-07 48.5