Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05655 ATGACTAGTACTATTGAACAACCTCAAAACTCAGAAACTGATAGTACCTCAAATTCACCATCACCACCATCACAATCCCAAAAAATCAAACGTCTTAGAGACACAAACAAGCATCCGGTATACCGTGGGGTCCGAATGCGAAATTGGGGAAAATGGGTATCTGAAATCCGCGAGCCGAGGAAAAAATCCCGAATATGGCTCGGCACATTTCCCACACCGGAAATGGCTGCTCGAGCACACGACGTAGCTGCTCTTAGCATAAAAGGAAGCGGCGCCATTCTCAATTTCCCAGAATTAGCTAACTCGCTCCCTCGACCAGCCTCACTCGCTCCCCGCGATGTTCAAGCCGCCGCTACCAAAGCCGCTCACATGGAATTTCCTTCTTCAACAAACTCCTATGAATTGAGTGAAATAACTGAACTTCCTCGTTTAGGAAATTGTGGAGATTTTGAGAAAGAGTTTGTTTTTATGGATTCTATTGATGCTTCTTGGATGTTTCAGCCTCCTTGCTTGCACACCATGGAAGATGTGATTTGGAGTGAAGCTGTTTATAATAACTATAGCTAG 567 0.448 MTSTIEQPQNSETDSTSNSPSPPSQSQKIKRLRDTNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSGAILNFPELANSLPRPASLAPRDVQAAATKAAHMEFPSSTNSYELSEITELPRLGNCGDFEKEFVFMDSIDASWMFQPPCLHTMEDVIWSEAVYNNYS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05655 188 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 136 - -
Trre6g05655 188 MobiDBLite consensus disorder prediction 1 36 - -
Trre6g05655 188 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Trre6g05655 188 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g05655 188 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Trre6g05655 188 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Trre6g05655 188 FunFam Ethylene-responsive transcription factor 2 39 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05655 Trre-Chr6 57614568 57615134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05655 10 176 AP2-EREBP Transcription Factor Family AT5G11590 57.500 1.15e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05655 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05655 K09286 - gmx:100794316 218.394