Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05635 ATGTTTAGTACTAATACTAATACCAATCATTTTCTAATACTAATTATGATTCTTTCACTAATCTTAATCACTCAAAGCCAAGAAAACAGAGAAAAACAACAGAACATGGCAGAGTTACCACAAGGTGTAACTCCTAGTAAAGGTGTTGTAATAATTGTTCTTTCCATAATGTTTCTCATAACTTTTATCTTACTTGTTTATGTTAAATTCTGTCGTGTTACACCTCTTCATCTTCTAAATCATCACCCTCTTCATCTTCAAAACAATCAAGCACAAACTCAATCAAGGCCTATAGTTTCTGGTGTTGAAAAAAAAGTAATTGAAACACTTCCTTTTTTCAAATTTTCTTCATTAAAGGGATCCAAACAAGGACTAGAATGTACCGTTTGTTTGTCGAAATTCGAAGATGAAGAGATTCTTAGATTGTTGCCGAAATGCAAGCACGCGTTTCATATGAATTGTATTGATCAGTGGCTTGAAAGTCACTCTACTTGTCCACTTTGTAGGTATATGGTTGAAGAAAATGACATAAAAAATTTCACTTTTTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAGGTGAAGACCCTAATCTTGAAATCTTTATTCAACGCAAACCGTCACAAAGAAGAAGCAACAAAGAAGAACTTGTTCTTGATTATGAAGAAGGTGGTAGCAGTAATAATGTTACAAAGTGGAAACAAGAACAATCTTTGGATATGATTAATCATAAAATATTAATCTCTGATGCTGTTAGAAGGAGTAGGTGGAGTGATCTTAATTCTTCAGATTTGTTATCATTGAAAAGTGAGATGCTTCATGATGTATCAAGTGCAAGATTTGATCCTAATGACGAGGATGAAAATTCGTTTACAGCATTGAATCCTGGTGAGAAAAGGTCTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATCAATAGAAGGAATGGTAATGGAGAGAATGGAAGTGATGAGAGGTTGTGGAGGATTTGGTTGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAATTCAGTTCAATCACAACATAAACATTTAGCTAATTCAAATGTTTAA 1101 0.3361 MFSTNTNTNHFLILIMILSLILITQSQENREKQQNMAELPQGVTPSKGVVIIVLSIMFLITFILLVYVKFCRVTPLHLLNHHPLHLQNNQAQTQSRPIVSGVEKKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDQWLESHSTCPLCRYMVEENDIKNFTFSFSSRFLRVPSNLGEDPNLEIFIQRKPSQRRSNKEELVLDYEEGGSSNNVTKWKQEQSLDMINHKILISDAVRRSRWSDLNSSDLLSLKSEMLHDVSSARFDPNDEDENSFTALNPGEKRSMSEIANVPRFVEINRRNGNGENGSDERLWRIWLPIARRTVQWFARQETNSVQSQHKHLANSNV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05635 366 CDD RING-H2_EL5-like 126 169 - -
Trre6g05635 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 179 IPR013083 -
Trre6g05635 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 351 - -
Trre6g05635 366 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Trre6g05635 366 FunFam RING-H2 finger protein ATL43 102 176 - -
Trre6g05635 366 Pfam Ring finger domain 126 169 IPR001841 -
Trre6g05635 366 SMART ring_2 127 168 IPR001841 -
Trre6g05635 366 SUPERFAMILY RING/U-box 108 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05635 Trre-Chr6 57430546 57431646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05635 45 361 C3H Transcription Factor Family AT2G20030 40.000 5.45e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05635 K10664 - gmx:100816668 372.474