Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05629 ATGGAGTGGGTCGTCGGCGGCAAGTTTAAGATTGGTCGCAAAATCGGTAGCGGTTCATTCGGTGAAATTTATATCGCGTCAGATATGGATACCTCTGAGATCGTAGCCGTCAAAATGGAGAAGAAGAAAACAAGGCATCCACAACTATTGTATGAGGCTAAATTATACAGTATTCTTCAAGGAGAAAGTGGTGTTCCAAGTATGAAATGGTGTGGTACTGATGGAGACCATAATGTTCTGGTTATTGATCTTTTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTTCTTTAAAAACAGTTTTGATGTTGGCCGACCAGATGCTTTCGAGAATAGAATACATGCATTCCAAGGGATTTTTGCATAGAGACATAAAACCAGATAACTTTCTAATGGGTATTAGGAGAAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATATAAGGATCCCAAAACAAACAAACATATTCCTTACAGAGAAAATAAAAATTTAACCGGGACTGCACGATATGCAAGTTGCAATACTCACTTAGGAATTGAGCAAAGTCGTCGTGATGATTTGGAGTCTATTGGCTATGTTCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTTGTGAGAAGAAATTATCAACTTCCATTGAGAAACTTTGCGAGTCATATCCCGTGGAGTTCACGTCTTACTTTCATTGTTGTCGCTCGTTGACATTTGATCAAGATCCAGATTACGGGTTCTTAAAGCGTCTGTTTCGTGATTTGTTCACCCGTGAAGGATATGAGCATGACAATTTATTCGACTGGACCATCCTAAAACATCAGCAGACGCAACAGACAAGGAGACAAGTGCAGCCTTCAGATGCTGTGCCTAGTGCTGTGCCTAGCAGTCTACAACCAATGATTGTGGAAAAGCATACAGGTATCAATAATTCACCTCAAATTACTGTAACAAAATTGGTAAGCAATCTTGATCGTCTAAACGTGCGTGGGCAGCCTAAGCCATCCAATATTAAGAATCTAAATGCCAAGAATCATACAGGAAAACATAATGTGAACAATGGTCCATCCACTTCATCTGCTTTGCCCAAATTGACTACAGAAAATGTTTCCAAGCCTGAAAGGCCCACAGGAACCTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATGTTTCAAGCAGCTGGATTCCTTCATTACGGCGAATTTCTTCAGCCAAATAG 1287 0.4048 MEWVVGGKFKIGRKIGSGSFGEIYIASDMDTSEIVAVKMEKKKTRHPQLLYEAKLYSILQGESGVPSMKWCGTDGDHNVLVIDLLGRSLEDLFVFCGSKFSLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYKDPKTNKHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKICEKKLSTSIEKLCESYPVEFTSYFHCCRSLTFDQDPDYGFLKRLFRDLFTREGYEHDNLFDWTILKHQQTQQTRRQVQPSDAVPSAVPSSLQPMIVEKHTGINNSPQITVTKLVSNLDRLNVRGQPKPSNIKNLNAKNHTGKHNVNNGPSTSSALPKLTTENVSKPERPTGTSNLGRVFGNNSHVSSSWIPSLRRISSAK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05629 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre6g05629 428 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05629 428 PANTHER CASEIN KINASE-RELATED 9 348 - -
Trre6g05629 428 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Trre6g05629 428 FunFam CK1 family protein kinase 1 325 - -
Trre6g05629 428 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05629 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre6g05629 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre6g05629 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05629 428 MobiDBLite consensus disorder prediction 352 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05629 Trre-Chr6 57408230 57412793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05629 8 213 EF-hand Containing Proteins AT2G17890 28.169 1.36e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre6g05629 Pkinase 2.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05629 K08960 K08959 gmx:100792736 711.449