Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05618 ATGGAGAAGAGTGAAACAACGCTGGATTTAGCTTCTAGGAAATCGGTGAGGCAATTGGATTTCACTGCCGTCTATGGAGGTCCGGTACACCTGACATTGTCGCCACCGACGGCGACGCCACGGTCACTTTCACAAACTACTCTACAGCCGCCGAAGCAGTCACGTACTCCGGCGCAATTGCAATTGGATTTTCAGTTACTAGGGCGACGGACGTGGTTATGTTCAGAGCCACGGTGGCAACAGCAGAGGACGTCACAGTCTCCGCCGGTAATGCCACGTTTAGAGTCACCGCAGTCACAGTTAGTTTCGCCCGTTCGTCGAATACAGAAACTTCCGGTGAAGAGGTTGCAAGCTGTGAAGCACGAATCTCCTAGTCCTAGATCACAGTCTCAAAATAATGCTGGATTAAAGGACAACACCCCAAAGAAACAAAAACATTGCAAATGCAAAAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGCGATGGTTGCAACTGTATAAATTGTCATAATAATGTGGACAATGAGACTGCCCGACAGGAGGCCGTTGGAATAACACTGGAAAGAAATCCAAATGCTTTCAAACCAAAAATTGCAAGCAGTCCACAAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAAATCAAGTAATAGGAAAGCACAACAAAGGATGCCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGCGAGTGTTTCCAAGCCAACATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAAGGGAGAGCAGTTTTTCAAGAAGAGTGCCATCTAGTTCAAATCAGAGAGGCAACTAATGCTGCCATTAGTGGAGCAGTTGGACCCTCCAGCTCTGGAACACATATAACACCCAAGAAGAGAAAAATCCAGGAAATATTTTCTGGCAAATCATTTGTAGATCAAACTGCTAACGCGACTTCTCAATACCAACAGGAACTTGATCCTATAGCTTCATCACCTTTATCCCTGTCAGCTTCCTTTGTTTCTGATACTGCCAACACAAGAACTTCAGGATCTTCAATATCTACGTACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAGTGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCCGGAGTAGCTGCAAATACAAATGCAGAAGTGAGAGGGGAAGTAGTTAGGAAAATAGGGCCTGGGAAATATGAAGCTTCTATTGCTTCATCAGCTCAACCGCTGCAAGACAGTAGATCTGTTCTCAACCCTGTTTGTGAGAATCATTCAAATAAAGATGTTGCAGATGCAGTTGATATTGACATTCGTAATAGGCCACCATCACCAGAAACACTTGAATTGATGTGTGATGAACAGGATGTGATGTTTTTCGAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGCGGACTCGTTACTCTTGGTAGCATAAAAGAAACAAGGTACTCCTCACTAATGAAGAAAGATGTGGGAATCAAGAAAGGACCCACAGACAATGGTGATAGTGGTGCTGAAACTAAGAAAATTATTGGCAACTGCACTACCAATAGCTCCATCCCAGCGGTTACGGAAGTATATGAAGCCGCCGATGCAAGAACTAATGGACATGATACTATTGATCTTTCATTGAGTGAAAAAAAGGTTACCAGGGTTGTTGTTCAGTCTGTTACTGCTGCTGTTCCTGTGCATTGTTAG 1755 0.4387 MEKSETTLDLASRKSVRQLDFTAVYGGPVHLTLSPPTATPRSLSQTTLQPPKQSRTPAQLQLDFQLLGRRTWLCSEPRWQQQRTSQSPPVMPRLESPQSQLVSPVRRIQKLPVKRLQAVKHESPSPRSQSQNNAGLKDNTPKKQKHCKCKNSRCLKLYCECFAAGIYCDGCNCINCHNNVDNETARQEAVGITLERNPNAFKPKIASSPQKPEVSMEEVSENQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDEGRAVFQEECHLVQIREATNAAISGAVGPSSSGTHITPKKRKIQEIFSGKSFVDQTANATSQYQQELDPIASSPLSLSASFVSDTANTRTSGSSISTYRSVLADVLQTQSVKNLCSLLVVLSGVAANTNAEVRGEVVRKIGPGKYEASIASSAQPLQDSRSVLNPVCENHSNKDVADAVDIDIRNRPPSPETLELMCDEQDVMFFEQERLILTKFRDVLGGLVTLGSIKETRYSSLMKKDVGIKKGPTDNGDSGAETKKIIGNCTTNSSIPAVTEVYEAADARTNGHDTIDLSLSEKKVTRVVVQSVTAAVPVHC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05618 584 MobiDBLite consensus disorder prediction 78 105 - -
Trre6g05618 584 MobiDBLite consensus disorder prediction 122 138 - -
Trre6g05618 584 PANTHER TESMIN/TSO1-RELATED 47 492 IPR028307 -
Trre6g05618 584 SMART CXC_2 142 182 IPR033467 -
Trre6g05618 584 SMART CXC_2 227 268 IPR033467 -
Trre6g05618 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 179 IPR005172 -
Trre6g05618 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 230 264 IPR005172 -
Trre6g05618 584 MobiDBLite consensus disorder prediction 35 57 - -
Trre6g05618 584 ProSiteProfiles CRC domain profile. 143 267 IPR005172 -
Trre6g05618 584 MobiDBLite consensus disorder prediction 78 145 - -
Trre6g05618 584 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05618 Trre-Chr6 57300581 57305675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05618 10 520 CPP Transcription Factor Family AT4G29000 42.626 2.09e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre6g05618 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05618 - K21776 gmx:100811459 677.552