Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05590 ATGGTATCTATCATGGAAAGGGAACGAACTCGTAAACGACCTCGTCTCGCTTGGGATGCAGCTCCACCTCCCTCAATTCCACCGGCACAGAGAACTTTGGCGGTGGTTGGTGATGAAGGAATCGAAAAAAAGTATGCATCGCCGCCGAGGAGAGACGACGATCGCGATGGCCATTATGTCTTTAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCAGCAAGATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCAATCAAGGTAATTAGAAGCATCAAGAAATATCGCGACGCAGCAATGATCGAGGTTGATGTGCTTGAACGTCTTACGAAGAGTGATGTGGGATGCTCACGCTGTGTACAGATCTTAAATTGGTTCGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATCTACGCCTAATCCACACTGACCTGAAGCCTGAAAACATACTTCTTGTTTCTTCTGACTATGTAAAACTTCCTAGTTGTAAGAGGGTTTTGTCAGATGAAACACAATTTAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGAAGTACTGCATTTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCATCCCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCACGGGAGGAGCGTTATTTCAGACACATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTTTACCACATCATATGGTTCAAAGATCTAAGGGTGTCGAAAAGTATTTCAAGCGTGGATCACGACTAAGATGGCCTGAAGGCGCTGTTTCAAGGGAAAGCATAAATGCAGTGAAGAAGCTTGGTCATCTCAAGGATATTATATCAAGTCATGTCGAATCTTCAAGGTCCTTATTAACTGATTTGTTATATGGCTTATTAACATATGATCCCGCCAAACGTATTACTGCTCGCGAAGCTCTTGATCATCCTTTCTTTAGAATTCCAACATAA 1200 0.4258 MVSIMERERTRKRPRLAWDAAPPPSIPPAQRTLAVVGDEGIEKKYASPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTRDYVAIKVIRSIKKYRDAAMIEVDVLERLTKSDVGCSRCVQILNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHDLRLIHTDLKPENILLVSSDYVKLPSCKRVLSDETQFRCLPKSSAIKLIDFGSTAFANQSHSSIVSTRHYRAPEVILGLGWSSPCDLWSVGCILIELCTGGALFQTHENLEHLAMMERVLGPLPHHMVQRSKGVEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISSHVESSRSLLTDLLYGLLTYDPAKRITAREALDHPFFRIPT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05590 399 FunFam Serine/threonine-protein kinase AFC2 58 151 - -
Trre6g05590 399 Gene3D Phosphorylase Kinase; domain 1 58 151 - -
Trre6g05590 399 CDD PKc_CLK 58 395 - -
Trre6g05590 399 SMART serkin_6 71 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05590 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Trre6g05590 399 FunFam Serine/threonine-protein kinase AFC2 147 395 - -
Trre6g05590 399 Gene3D Transferase(Phosphotransferase) domain 1 125 395 - -
Trre6g05590 399 MobiDBLite consensus disorder prediction 1 16 - -
Trre6g05590 399 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g05590 399 Pfam Protein kinase domain 71 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05590 399 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 37 396 - -
Trre6g05590 399 SUPERFAMILY Protein kinase-like (PK-like) 58 396 IPR011009 -
Trre6g05590 399 ProSiteProfiles Protein kinase domain profile. 71 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05590 Trre-Chr6 57067569 57071035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05590 71 395 Core Cell Cycle Gene Families AT1G76540 26.786 8.05e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre6g05590 Pkinase 8.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05590 K08287 - gmx:100782453 691.419