Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05587 ATGGAAGAAAGTGGTGGAAAGGAGGAAACCCTACCGCCGGGATTTCGATTTCATCCTACAGATGAAGAACTTATAACTTGCTATCTTATAAATAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAAATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAAGCAAAGATGGGAGAAAAGGAATGGTACTTTTTTAGTATGAGAGATCGTAAATATCCAACTGGAGTGAGAACCAATCGAGCAACTAACAGTGGATACTGGAAGACCACAGGGAAAGACAGAGAAATATTCAACAGTGTTACATTAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGCATTCACTCTAAATCAACATTTCGAACAAACAAGCAGGAAGAATGGGTGGTATGTCGGATATTCAAGAAGAGTGGTAGTGGAAAAAAGTACCCTTGTAATTCCAATTCCAACCATACAAGAGCAGGATTGAATCCTTATAGCATGCAAGAAATAGGTTCTAGTAATATGGTGTCAATTCCACCACAAATGATGCAGTACTACCTGCAGGGACTGCATGGAGATCCTTCTACTCCTCATTTCCTTTATGGACGGAACAATAATAATTACATCAACGGTTCAAATGCAGAGGTTTTAAGAGGAGGAACAATGCAATCTCATCAGATGAATTGTCCTTCAATGTTGCCAGCAACTACAGGAGAAGGAGGAGGATTCAGCATTTCAGGTCTAAATTTGAACCTTGGATCAGGTGGAGGAGCTACCACAACAACACAACCTATTTTGACCTCAATGCAACATTCTCAATATGCAATGGCTGATAATGTCAGTTCAATAAACATGAATATGGCTTCTATTAGTGCAGATCAGAATATTAATAATTTTGTAGGTTATAATAATGGTGTGGAGCATTGCATGGATCTTGAAACTTACTGGCCTAATTCCTACTAA 1017 0.3845 MEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDINLNKSEPWELPGKAKMGEKEWYFFSMRDRKYPTGVRTNRATNSGYWKTTGKDREIFNSVTLELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQEEWVVCRIFKKSGSGKKYPCNSNSNHTRAGLNPYSMQEIGSSNMVSIPPQMMQYYLQGLHGDPSTPHFLYGRNNNNYINGSNAEVLRGGTMQSHQMNCPSMLPATTGEGGGFSISGLNLNLGSGGGATTTTQPILTSMQHSQYAMADNVSSINMNMASISADQNINNFVGYNNGVEHCMDLETYWPNSY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05587 338 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Trre6g05587 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 240 - -
Trre6g05587 338 FunFam NAC domain-containing protein 100-like 20 164 - -
Trre6g05587 338 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Trre6g05587 338 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Trre6g05587 338 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05587 Trre-Chr6 57038955 57040991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05587 2 336 NAC Transcription Factor Family AT2G24430 49.280 4.71e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g05587 NAM 1.2e-38 No_clan