Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05584 ATGGCATCAACGGAATCAGATCTAGATGAGTTTCTCAATCTCGATTACGAACTTCATTATCCAACTCTTGCCGATACGGAAGCATTCATGACCGGCGTTTGCTCCGCCGCTTTTCAAACTCTGTTACCGGATGCAGTGACTTCATTTTCAACTTGTGGTGGCCTAACAGACTCCCAAAACTTTACTCCCAAACATTCCACCATCACTGCTACTATTGATTCTCAATCATCAATTTATGTCACTGTTGGAAGTCCAGTTTCAGCTAATAAACCAAACAGTAGAGAGAATCATACCAAAGGGACTACAAGTGGTTCCTCTGATCCTTCTGATGAGGATGATGAATTAGGTCCTTGTGAACAAAGCACAAATCCACTTGATATCAAACGCCTTAGAAGGAAGGATTCTAATCGCGAGTCAGCCAGGAGGTCAAGGCTAAGAAAACATGCGCATTTGTCTGAACTTGAGTCTCAGGTTGAAAAGCTGAAACTGGAAAATGCAACTCTATACAAGCAGTTTACAGATACTAGTCAACAATTTCATGAAGCCGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAAGATATGGTCACTAGGAGCTCTTTCACCACATCCTTAAACAATCAATTTTTTCACAATCAATTGAGCACACCACCACAACTCAGCGCGACTAATATTCGTCGCATGCCACATGTCTCGCCAACCATCAATGTCCAGCAGGGAAATGGTACCTCATACGGTGGCGTTGCGTTTGGTGAACACAATTCAAATCTTGTTGGATTTGGAAACTTGGATATGAGTAATTTCAACGACGTCGTCGACAATGGAGTCCTAAGCAATGCTTTGAGCTGTGTAACTATTTGGCCTTAA 900 0.4211 MASTESDLDEFLNLDYELHYPTLADTEAFMTGVCSAAFQTLLPDAVTSFSTCGGLTDSQNFTPKHSTITATIDSQSSIYVTVGSPVSANKPNSRENHTKGTTSGSSDPSDEDDELGPCEQSTNPLDIKRLRRKDSNRESARRSRLRKHAHLSELESQVEKLKLENATLYKQFTDTSQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFFHNQLSTPPQLSATNIRRMPHVSPTINVQQGNGTSYGGVAFGEHNSNLVGFGNLDMSNFNDVVDNGVLSNALSCVTIWP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05584 299 MobiDBLite consensus disorder prediction 83 147 - -
Trre6g05584 299 PANTHER BASIC LEUCINE ZIPPER 63 56 253 - -
Trre6g05584 299 Coils Coil 186 206 - -
Trre6g05584 299 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 131 146 IPR004827 GO:0003700|GO:0006355
Trre6g05584 299 SMART brlzneu 124 188 IPR004827 GO:0003700|GO:0006355
Trre6g05584 299 MobiDBLite consensus disorder prediction 125 141 - -
Trre6g05584 299 MobiDBLite consensus disorder prediction 83 105 - -
Trre6g05584 299 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 126 189 IPR004827 GO:0003700|GO:0006355
Trre6g05584 299 Pfam bZIP transcription factor 127 172 IPR004827 GO:0003700|GO:0006355
Trre6g05584 299 Coils Coil 151 171 - -
Trre6g05584 299 SUPERFAMILY Leucine zipper domain 127 179 IPR046347 GO:0003700|GO:0006355
Trre6g05584 299 CDD bZIP_plant_GBF1 129 180 IPR045314 GO:0003700|GO:0006355
Trre6g05584 299 Gene3D - 127 183 - -
Trre6g05584 299 FunFam BZIP transcription factor 126 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05584 Trre-Chr6 57016718 57021400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05584 73 299 bZIP Transcription Factor Family AT5G24800 47.863 6.88e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g05584 bZIP_1 4.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05584 K25784 - gmx:780555 355.14