Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05572 ATGGATCAACCAAAGAAACCTAACAAGATCAGAGACATCGTTAGACTTCAACAGATCCTAAAGAAATGGAGAAGAGCAGCCAATGATTCAAAAACAAACAGCAGCAGCAACAGCAGCAGTACTACTAGTAAAAGCATAAAATTTCTGAAAAGAACACTTTCAATGTCCGAACACGAAGGAGGAGGATCAAGTAACGCGGTTCCGAAAGGCTACCTAGCTGTTTGTGTTGGTGTAGACCTTAACAGGTTTGTTATACCAACCGAGTATTTGACACATCAAGCCTTTCATATATTACTCAGAGAAGCTGAAGAAGAATTCGGGTTTGAACAAACTGGTGTTCTGAGAATTCCTTGTGAAGTATCTGTGTTTGAGAGTATCTTGAAAATGGTGGAAGGAAAAGGTAGATTTTCTATTCAGAAATGTAGTTTGGGTATTGAAAAAATGATGGGATACTGTTCCTCAAACCAGCTTGGTTATCATCATCATCCTCAAAGTCCTATGTGCAGATAG 510 0.3902 MDQPKKPNKIRDIVRLQQILKKWRRAANDSKTNSSSNSSSTTSKSIKFLKRTLSMSEHEGGGSSNAVPKGYLAVCVGVDLNRFVIPTEYLTHQAFHILLREAEEEFGFEQTGVLRIPCEVSVFESILKMVEGKGRFSIQKCSLGIEKMMGYCSSNQLGYHHHPQSPMCR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05572 169 MobiDBLite consensus disorder prediction 29 44 - -
Trre6g05572 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 42 126 IPR003676 GO:0009733
Trre6g05572 169 Pfam Auxin responsive protein 22 130 IPR003676 GO:0009733
Trre6g05572 169 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05572 Trre-Chr6 56938673 56939182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05572 3 169 Calmodulin-binding Proteins AT2G24400 53.005 3.42e-54 167