Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05567 ATGCAACAGAGACTCAAGCTGCAGCAACAGCAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCATCACCCTGGCATGCTTGCCGCTGCCGCTATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTTGCGGAAGTTTTTCAGAGTGCTGGCCCTCTTGCCGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCGCTTGCAATAATGACATTGCATGGAAGACAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACGGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGTAGCTCAAATGAAGAGAAAATTAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATGGCAACGAGGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAATTCCATGCATTGGGGGCTGGGGTACTTGAGGAGGTCCGAATTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCACGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGGAGACCAGTTCGCGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCGTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTTCGCCCGCTGAGTTGTTGGCTTATCAGCGCCAGTTAGCCTTGAGTCAGGCCGCAGTATCTGGCCTTTCAGGACAAGCTCTTCTCCAAATGTCTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGCAGCATCTCAAGCCATGTATGACGGATATACTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTGA 1323 0.4618 MQQRLKLQQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNGNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRIQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05567 440 FunFam Oligouridylate-binding protein 1C 243 344 - -
Trre6g05567 440 SUPERFAMILY RNA-binding domain, RBD 252 344 IPR035979 GO:0003676
Trre6g05567 440 Gene3D - 1 142 IPR012677 -
Trre6g05567 440 Gene3D - 244 344 IPR012677 -
Trre6g05567 440 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 47 343 - -
Trre6g05567 440 Gene3D - 143 223 IPR012677 -
Trre6g05567 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 216 IPR000504 GO:0003723
Trre6g05567 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 334 IPR000504 GO:0003723
Trre6g05567 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 127 IPR000504 GO:0003723
Trre6g05567 440 SMART rrm2_1 267 336 IPR003954 GO:0003676
Trre6g05567 440 SMART rrm2_1 145 218 IPR003954 GO:0003676
Trre6g05567 440 MobiDBLite consensus disorder prediction 241 265 - -
Trre6g05567 440 SMART rrm1_1 267 336 IPR000504 GO:0003723
Trre6g05567 440 SMART rrm1_1 145 218 IPR000504 GO:0003723
Trre6g05567 440 SMART rrm1_1 60 129 IPR000504 GO:0003723
Trre6g05567 440 SUPERFAMILY RNA-binding domain, RBD 43 137 IPR035979 GO:0003676
Trre6g05567 440 CDD RRM2_PUB1 143 222 - -
Trre6g05567 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 133 IPR000504 GO:0003723
Trre6g05567 440 FunFam Nucleolysin TIAR-like protein 143 241 - -
Trre6g05567 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Trre6g05567 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 340 IPR000504 GO:0003723
Trre6g05567 440 MobiDBLite consensus disorder prediction 331 355 - -
Trre6g05567 440 FunFam Nucleolysin TIAR-like protein 1 142 - -
Trre6g05567 440 SUPERFAMILY RNA-binding domain, RBD 138 251 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05567 Trre-Chr6 56902216 56909597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05567 48 340 Eukaryotic Initiation Factors Gene Family AT1G22760 25.329 3.37e-19 88.6