Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05564 ATGGAGCTCAAAAATGAAAAACTAGCCAGGTTCTCCAACGATGGAAAGTTTAATCTTGAGAAGCCAATGCAAGTTTATAAGATTCCAAAAATTCTTTTTCCGGATGGGAAAATAAGTATTGGTGATACCGATAATGATAAGAATAGAATGAATATAAAATTTCCAAGAAATCATGAACAATGGAAGAAGAGAATTCTTGATCCAGGAAGTGATATCTTTCTGGAATGGAAAAGGGCTTTCTTATTTTCTTCCATACTATCACTTTTCGTTGATCCATTGTTTTTCTATCTTCCGTCGGTAGCAATAGCAACTGATAAGAGTTCATCATGCATGGTTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTTCGGACATTTGCCGATGTTTTCTATTTGCTTAACATGATCATAAAGTTTAGGACAGCCTTTGTGTCACCAAGTTCTAGGGTTTTTGGGAGAGGTGAACTTGTCATGGATCTGGGGTTGATTGCGAGACGGTATTTGAGATCTGAGTTTTTCTTAGATCTTTTTGCTGCACTGCCTCTTCCTCAGATCGTGATTTGGTTTATAATGCCAGCAATTAGAAGCTCGCATGCTGATCATACGAACAATGCTCTTGTACTGATTGTTCTGATTCAATATGTTCCCAGATTGTATATGATTTTTCCATTAAGTTCTCAGATTGTTAAAGCTACCGGTGTTGTCACAAAGACGGCTTGGGCAGGAGCTGCTTACAATCTTTTACTTTACTTGTTAGCTAGTCATGTGTTGGGGGCTTCATGTACTATAAACGATGATGATCGCACAAAGTGGGCGAATACTACTTCTTTGTTTGGTAACTGCACTCCTGAAAGTAGCACAAGTTTCAAGTATGGAATTTTTGGAATTGCAGTGGAAAATAATGTTCTCTCCTCTGTGTTTATTGAGAAGTACCTCTATTGTTTGTGGTGGGGATTGCAGAATTTGAGTTCCTATGGTCAGGGTTTGACTACAAGTACGTTTGTTTGGGAAACTGCATTTGCGATACTTATATCTATCGTAGGTCTAGTTTTGTTTGCTCACTTAATCGGTAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACAGAAGAGTGGATGAAACATCGCCAACTCCCACAGTTTCTTAGAGAGCGTGTCCGGAGATTTGTTCAGTACAAATGGCTTGCAACTCGAGGTGTTGATGAAGAAACAATCCTAAGAGGCCTCCCTACAGACCTTCGTAGAGATATCCAACGCCATCTTTGCTTAGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGACGCAATATGTGAGCGGTTGGCTGCTTGGCGCCGGTTCAAAAAGAGAGTATTAGCAAATAGCCTTAGCTTGAGGGAATACAAGTCCTTCATTGATGAACAAGTAAGAGATCAAATGGAACGTGAGGAAGAAGAGCACAGTTCTGTGACTTCAAACACTGCACAAGTAAAACAGAATCTCGGTGTCACTATACTGGCTTCAAGATTTGCTGCGAACACAAGGAAAGGTGTTCAGAAGATCAAAGATGTAGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGCCTGAAGATGATTAA 1668 0.3999 MELKNEKLARFSNDGKFNLEKPMQVYKIPKILFPDGKISIGDTDNDKNRMNIKFPRNHEQWKKRILDPGSDIFLEWKRAFLFSSILSLFVDPLFFYLPSVAIATDKSSSCMVTDLNLGIVVTCFRTFADVFYLLNMIIKFRTAFVSPSSRVFGRGELVMDLGLIARRYLRSEFFLDLFAALPLPQIVIWFIMPAIRSSHADHTNNALVLIVLIQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYLLASHVLGASCTINDDDRTKWANTTSLFGNCTPESSTSFKYGIFGIAVENNVLSSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILISIVGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLAAWRRFKKRVLANSLSLREYKSFIDEQVRDQMEREEEEHSSVTSNTAQVKQNLGVTILASRFAANTRKGVQKIKDVEMLKLQKPEEPDFSVEPEDD 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05564 555 Pfam Ion transport protein 76 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre6g05564 555 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 460 - -
Trre6g05564 555 SUPERFAMILY Voltage-gated potassium channels 69 365 - -
Trre6g05564 555 FunFam Cyclic nucleotide-gated ion channel 1 370 434 - -
Trre6g05564 555 SUPERFAMILY cAMP-binding domain-like 373 459 IPR018490 -
Trre6g05564 555 Gene3D Helix hairpin bin 371 434 - -
Trre6g05564 555 Gene3D - 93 369 - -
Trre6g05564 555 PRINTS EAG/ELK/ERG potassium channel family signature 312 329 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05564 555 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05564 555 PRINTS EAG/ELK/ERG potassium channel family signature 338 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05564 555 PRINTS EAG/ELK/ERG potassium channel family signature 406 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05564 555 PRINTS EAG/ELK/ERG potassium channel family signature 356 365 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05564 Trre-Chr6 56873013 56875772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05564 454 551 Ion Channels AT2G24610 46.226 3.16e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05564 K05391 - mnt:21402775 645.58