Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05558 ATGGATTCCGAAGATGATATGCACGATGCCAACGATATTAAGTCTCTCGATGACGATTACTACCGTAGTGAAACCGAAGATGTTGCCATGGATAACCACAACGACTATGCAGTTGATGATTACTTTGCTGCGTTTCCTCGAACCGATCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACAGCAGAAAGATGATATCAGTAGAGTATCAGCTGTTCTTTCCATACCACAGGTTGCTGCAACCATCTTACTCTGTCATTATAATTGGAGAGTCAGTAGTGTTAACGATGCTTGGTTTGCAGACGAAGGTAAAGTTCGAAGAACTGTTGGTTTGTTGGAGAAGCCGGTTTATGAGAATCCTTCTGCTGATGTCAAAGAGAATGTTATTACTTGCGGCATTTGTTTTGAATCTTACCCTCCTTCTGAGATTGAAACGGCTTCTTGTGGTCATCCATTCTGTTTTTCATGCTGGGCAGGATTTATTGGGACTTCAATTAGAGATGGTCCGGGTTGCTTGATGCTGAGATGTCCTGATACCGGTTGTGGTGCCGCTGTTGATCCAGATATGATTAATCTTTTAGCATCTGATGAAGATAACTACAAGTATGATCGTTACCTTCTCAGATCTTACATTGAATACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGACGGTGGAACCGGAAAAAATTATGATGTATCTTGTGTTTGTTCAAATAGATTTTGTTGGAATTGCACCGAAGAGGCTCACCGTCCGGTGGATTGTGACACCGTGTCAAAGTGGATTATAAAAAACAGTTCAGAATCTGAAAATACAAACTGGATATTTGCTTACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATCGAAAAAAACCAAGGGTGCTCGCATATGACATGTTCTTCACCTTGTAGATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGAGAGAACATGGGGGTCCTTGCAATCGTTATGAAGCGGCTGAAAGAGATGATATTGAAAAAAGAAGAGAAATGGTAAAGAAATCAGTGGAGAAGTACACACATTATTATGAGCGATGGGCTAGCAACCATTCTTCAAGGGAAAAAGCTGTTGCTGATCTACAAAAGATGCAAACTCTTCATATTAAGATGCTTAGTGACACACTGAGCATACCTGAGACACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCAGATAACGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCTGAATCAGGTTTGGAAAGACTTCATCAATGTGCGGAAAAGGAACTCCAAGTATTCCTCGAAGCACCGTCTGAAGAATTCAATGATTTTAGTAGAAAACTAACTGGATTGACCGCTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGAGGTGGATGGCGATGGAATAACCGATCATCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCAGATGTGCCATCGCATGTCAGATGTGCAATCAACTACGTCCATTTTGA 1620 0.4086 MDSEDDMHDANDIKSLDDDYYRSETEDVAMDNHNDYAVDDYFAAFPRTDQSFTILKESDIRQQQKDDISRVSAVLSIPQVAATILLCHYNWRVSSVNDAWFADEGKVRRTVGLLEKPVYENPSADVKENVITCGICFESYPPSEIETASCGHPFCFSCWAGFIGTSIRDGPGCLMLRCPDTGCGAAVDPDMINLLASDEDNYKYDRYLLRSYIEYNKKTKWCPAPGCEHAVNFDGGTGKNYDVSCVCSNRFCWNCTEEAHRPVDCDTVSKWIIKNSSESENTNWIFAYSKPCPKCKRPIEKNQGCSHMTCSSPCRFEFCWLCLGAWREHGGPCNRYEAAERDDIEKRREMVKKSVEKYTHYYERWASNHSSREKAVADLQKMQTLHIKMLSDTLSIPETQLKFITEAWLQIVECRRVLKWTYAYGYYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLEAPSEEFNDFSRKLTGLTAVTRNYFENLVRALENGLCEVDGDGITDHHWFCEQCTFANVRCAIACQMCNQLRPF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05558 539 FunFam RBR-type E3 ubiquitin transferase 127 216 - -
Trre6g05558 539 ProSiteProfiles Zinc finger RING-type profile. 133 177 IPR001841 -
Trre6g05558 539 ProSitePatterns Zinc finger RanBP2-type signature. 514 533 IPR001876 -
Trre6g05558 539 Pfam Ariadne domain 342 501 IPR045840 -
Trre6g05558 539 CDD BRcat_RBR_ANKIB1 209 274 - -
Trre6g05558 539 ProSiteProfiles TRIAD supradomain profile. 129 337 IPR044066 -
Trre6g05558 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 213 IPR013083 -
Trre6g05558 539 SUPERFAMILY RING/U-box 284 335 - -
Trre6g05558 539 SUPERFAMILY RING/U-box 128 215 - -
Trre6g05558 539 SUPERFAMILY RING/U-box 203 273 - -
Trre6g05558 539 Gene3D - 261 504 - -
Trre6g05558 539 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 421 IPR031127 GO:0004842|GO:0016567
Trre6g05558 539 Pfam IBR domain, a half RING-finger domain 289 329 IPR002867 GO:0008270
Trre6g05558 539 Pfam IBR domain, a half RING-finger domain 203 265 IPR002867 GO:0008270
Trre6g05558 539 SMART ibrneu5 269 333 IPR002867 GO:0008270
Trre6g05558 539 SMART ibrneu5 202 265 IPR002867 GO:0008270
Trre6g05558 539 FunFam RBR-type E3 ubiquitin transferase 266 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05558 Trre-Chr6 56859105 56860724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05558 17 537 ARIADNE family AT1G65430 59.304 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05558 K11968 - gmx:100810427 839.336