Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05557 ATGGATTCCGAAGATGATATGCACGGTGCCAACGATATTGAGTCTCTCAATGTCGACGATTACGGTGGTGAAACAGAAGAAGATGATCCCATGGATAACTGCAGCGACTATGAAGATGATGATGCTGATGACTTTGGTGAGCCTCGTCGAACCGATCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACAGCAGAAAGATGATATCAGTAGAGTATCAGCTGTTCTTTCCATACCACAGGTTGCTGCAACCATCTTACTCTGTCATTATAATTGGAGAGTCAGTAGCGTTAACGATGCTTGGTTCGCCGACGAAAGTAAAGTTCGAAGAACTGTTGGTTTGTTGGAGAAGCCAGTTTACGAGAATCACTCTAAGATTATTACTTGCGGCATCTGTTTTGAAGATTACCCTCTTTCTAAAATTGAAACAGCTTCTTGCGGTCATCCATTCTGTTTTTCATGCTGGGGAGGATATATTGGTAATTCAATTCGAGATGGTCCGGGTTGCTTGATGCTGAGATGTCCTGATCCCGGTTGTGGTGCCGCTGTTGATCGAGATATGATTAATCTTTTAGCATCTGATGAAGATAACGACAAGTATGATCGTTACCTTCTCAGATCTTACATTGAAGATAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCTGTTAATTTTGACGCTGGAACCCGAAAAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACCGAAGAGGCTCACCGTCCGGTGGATTGTGACACCGTGTCAAAGTGGATTATAAAAAACAATGCAGAATCCGAAAACACAAACTGGATACTTGCTTACACAAAGCCATGTCCCAAGTGCAAGAAACCGATCGAAAAAAACCAAGGGTGCTCGCATATGAGATGTCGCCCACCTTGTGGATTTGAATTTTGCTGGCTATGTCTTGGTTCTTACAGAGAACATACGGGTTCTTGCAATCGTTATGAAGTGGCTAAACTAGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAAATCACTGGAGAGGTACACACATTATTACGAGCGATGGGCTAGCAACGAATCTTCAAGGCAAAAAGCTGTTGCTGATCTACAAAAGATGCAAACTGTTGTTGAGAGCCTTAGTGAAACAAAGCGCCAACCTGCGGCGCAGCTTAAGTTCATAACTGAGGCTTGGTTACAGATAGTTGAGTGCAGGCTGATATTGAAGTGGACATATGCATATGGTTACTATTTACCCGAATTTGAGCATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTACTGAAAAGGAACTCCAAGTATTCCTCGGCTTGGATGCCGCGTCTAAAGAATTCGATGATTTTCGTAAAAGACTAGTTGAATTGACCACTGTCACTGGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGCAGTGGAATAACTTATCAGCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCAGATCTGCCACCGCATGCGAGATGTGCAATCAACAACGTCCATTTTGA 1617 0.4174 MDSEDDMHGANDIESLNVDDYGGETEEDDPMDNCSDYEDDDADDFGEPRRTDQSFTILKESDIRQQQKDDISRVSAVLSIPQVAATILLCHYNWRVSSVNDAWFADESKVRRTVGLLEKPVYENHSKIITCGICFEDYPLSKIETASCGHPFCFSCWGGYIGNSIRDGPGCLMLRCPDPGCGAAVDRDMINLLASDEDNDKYDRYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGTRKNYDVSCLCSYSFCWNCTEEAHRPVDCDTVSKWIIKNNAESENTNWILAYTKPCPKCKKPIEKNQGCSHMRCRPPCGFEFCWLCLGSYREHTGSCNRYEVAKLDETEKRREMAKKSLERYTHYYERWASNESSRQKAVADLQKMQTVVESLSETKRQPAAQLKFITEAWLQIVECRLILKWTYAYGYYLPEFEHAKKQFFEYLQGEAESGLERLHQCTEKELQVFLGLDAASKEFDDFRKRLVELTTVTGNYFENLVRALENGLCDVDSSGITYQHWFCEQCTFANVRSATACEMCNQQRPF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05557 538 Gene3D - 259 503 - -
Trre6g05557 538 SUPERFAMILY Ran binding protein zinc finger-like 511 536 IPR036443 -
Trre6g05557 538 MobiDBLite consensus disorder prediction 1 49 - -
Trre6g05557 538 SUPERFAMILY RING/U-box 200 271 - -
Trre6g05557 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 215 IPR013083 -
Trre6g05557 538 ProSitePatterns Zinc finger RanBP2-type signature. 513 532 IPR001876 -
Trre6g05557 538 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 418 IPR031127 GO:0004842|GO:0016567
Trre6g05557 538 FunFam RBR-type E3 ubiquitin transferase 264 503 - -
Trre6g05557 538 SUPERFAMILY RING/U-box 126 212 - -
Trre6g05557 538 FunFam RBR-type E3 ubiquitin transferase 125 214 - -
Trre6g05557 538 SUPERFAMILY RING/U-box 282 332 - -
Trre6g05557 538 MobiDBLite consensus disorder prediction 19 43 - -
Trre6g05557 538 Pfam IBR domain, a half RING-finger domain 200 263 IPR002867 GO:0008270
Trre6g05557 538 Pfam IBR domain, a half RING-finger domain 281 331 IPR002867 GO:0008270
Trre6g05557 538 ProSiteProfiles Zinc finger RanBP2 type profile. 505 538 IPR001876 -
Trre6g05557 538 Pfam Ariadne domain 340 501 IPR045840 -
Trre6g05557 538 ProSiteProfiles TRIAD supradomain profile. 127 335 IPR044066 -
Trre6g05557 538 Gene3D - 507 538 - -
Trre6g05557 538 ProSiteProfiles Zinc finger RING-type profile. 131 175 IPR001841 -
Trre6g05557 538 CDD BRcat_RBR_ANKIB1 207 272 - -
Trre6g05557 538 SMART ibrneu5 200 263 IPR002867 GO:0008270
Trre6g05557 538 SMART ibrneu5 276 331 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05557 Trre-Chr6 56854039 56855655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05557 32 536 ARIADNE family AT1G65430 61.400 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05557 K11968 - gmx:100810427 830.091