Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05554 ATGTCATCCGCCATTATCGGAGACGACGACATTTCCAACGGCAGACAAGGTTCATATCTCTTAACACCAGCGATCTCCGGTGGTAAACCGCCTCTTTCATCGTCGTCATCGAAGAATAAGTGTCACAACTACTCTGACGGCGGAAAAGGCTCTCATTCTAACAAATGTCATTGCACAAACAAAAGGAAAAGTAAGATGAAGAGAACGGTGAGAGTAGCGGCAATAAGTGATAAAATTGCCGATATACCAAAGGATGAGTATTTTTGGAGGAAGTATGGTCAAAAATCGATAAAAGGATCACCGTATCCAAGGGGATATTATAAGTGCACTACAATGAAAGAGTGTCCAGCTAAAAAAAAGGTGGAGAGGGCAAAGGATGATCCTAGGAATTCTGGTGATGGGTCTCAGGAGCTTAGCTCAATTGGTGGATATTTGTATTATTATCCAGGGGATTAG 456 0.4232 MSSAIIGDDDISNGRQGSYLLTPAISGGKPPLSSSSSKNKCHNYSDGGKGSHSNKCHCTNKRKSKMKRTVRVAAISDKIADIPKDEYFWRKYGQKSIKGSPYPRGYYKCTTMKECPAKKKVERAKDDPRNSGDGSQELSSIGGYLYYYPGD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05554 151 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g05554 151 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 128 IPR044810 GO:0003700
Trre6g05554 151 Pfam WRKY DNA -binding domain 84 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05554 151 SUPERFAMILY WRKY DNA-binding domain 81 129 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g05554 151 Gene3D WRKY domain 61 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g05554 151 MobiDBLite consensus disorder prediction 1 64 - -
Trre6g05554 151 MobiDBLite consensus disorder prediction 28 54 - -
Trre6g05554 151 Pfam Plant zinc cluster domain 38 81 IPR018872 -
Trre6g05554 151 SMART WRKY_cls 83 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05554 151 ProSiteProfiles WRKY domain profile. 78 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05554 151 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05554 Trre-Chr6 56840402 56841187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05554 4 127 WRKY Transcription Factor Family AT2G24570 58.519 1.64e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g05554 WRKY 3.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05554 - - zju:107406622 163.31