LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g05544	ATGGGCAGCATGTTAAAAGATACTGCCAATACTCGAGATCGAAATGGTCAAGTATGTAGCCGTCTTGGTTGCAGCAGCAAAGTTAACTCTTCTAAAGGCTCTCAAATTGGTTCCTCCGAAAAGGGTAAATCGTTGAGGCCTTCATTTCGGTTCTCATCAAATGGTAAGGAAACAATTGGAAGCTCCTCTAAAAATTTCTCCGGGAGTAGTAACCCAGGAAAACCTCATAGAAAGCCTCAGAAAACATTATCATCTCATGTAGAGACAGATTTGTCTGAAACTAGTAGTGTACAAGATGAACCAGAAGTTCCAAAGCTCGTACCAGAAAAAAATCAGAAGGGACGTCAAGCTGAAGGGGAACACACAGAGTCTGGTAATGGCATGCAGACGGAAGTAGGGAGTTCTAGTTTAGCATCTAATACAAGATCAAGGAGGAATTTTCATCCAAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACCGGTCCAGGGACACGTGCTGGTACCAGTAGGTATGGATTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATTCCGGCCGGCTGTACACCATCAGATTCAAACCTTAACAAAAGGAAGGATGCGATAAAAAAAAGAAATTGTGAAGGCGAAAGTAGTTCTACAGCCAAAGGGAAAAAAATAAACGGGCCCTCGGTAGAAGGACGGAATTCTGTTTCCAGAAATGGCATATCTATCTCTGATACAAGAATATCAAGAAATACCTCTAATAGAGACAGAACAGACAGCAACATAACGTCTGTTAGAACACGAAGATCAATTGGTGGTCATGCTAGGGGAAGGCTTTCTGGCCAAGGAAATGCTAATCCTGTGGCATCAAATCAGTCCCTTATCATGGTGCCTTCTTTTTCTCATTCTGGCAATCTTAATGCTCCTGGTGCACAACATCATAATTCTCTGGAGACCCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGTGAGGAGTTATACGGTGTTATGCCAGGGTCACCTGCAGAATATGGCCTCACTAATTCTCTAATAAATCGGGATAACTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCTTTTGCTGGAATCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCACAGAGAAATGCGGTTGGACATTGATAATATGTCATATGAGGAACTATTGGCTCTTGAAGAGAGGATGGGTACTGTGAGCACAGCTGTAACCGAGGAAGATCTATCAGAATGCCTAAAGAGAAGTTCCTTTCAATCCTCACCCTCAGAAAATGCATCTAAGTGTTGCAATGAGAATAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGCGGAGGATGAAGTGGGGAGTCTACTATGCGAACACAAGTATCACGCTGTTTGCATACAGCAATGGCTACGACTCAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAGTTCATCGTCGTCCAACTAA	1566	0.431	MGSMLKDTANTRDRNGQVCSRLGCSSKVNSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSKNFSGSSNPGKPHRKPQKTLSSHVETDLSETSSVQDEPEVPKLVPEKNQKGRQAEGEHTESGNGMQTEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTSRYGLRNLKCNSISDVIPAGCTPSDSNLNKRKDAIKKRNCEGESSSTAKGKKINGPSVEGRNSVSRNGISISDTRISRNTSNRDRTDSNITSVRTRRSIGGHARGRLSGQGNANPVASNQSLIMVPSFSHSGNLNAPGAQHHNSLETPSSPSSYSGAGTSSEELYGVMPGSPAEYGLTNSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHREMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECLKRSSFQSSPSENASKCCNENKDDIKCSICQEEYVAEDEVGSLLCEHKYHAVCIQQWLRLKNWCPICKASVAQSSSSSSN	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	186	286	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	198	214	-	-
	Trre6g05544	521	FunFam	E3 ubiquitin-protein ligase arkadia	430	514	-	-
	Trre6g05544	521	Pfam	Ring finger domain	467	509	IPR001841	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	85	99	-	-
	Trre6g05544	521	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	53	513	IPR045191	GO:0061630
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	153	167	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	302	332	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	1	172	-	-
	Trre6g05544	521	SUPERFAMILY	RING/U-box	462	514	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	1	78	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	103	120	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	122	146	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	302	329	-	-
	Trre6g05544	521	MobiDBLite	consensus disorder prediction	215	265	-	-
	Trre6g05544	521	ProSiteProfiles	Zinc finger RING-type profile.	468	509	IPR001841	-
	Trre6g05544	521	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	429	515	IPR013083	-
	Trre6g05544	521	SMART	ring_2	468	508	IPR001841	-
	Trre6g05544	521	Coils	Coil	372	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g05544	Trre-Chr6	56744027	56746303	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g05544	348	509	C3H Transcription Factor Family	AT2G15530	40.237	1.63e-33	133

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g05544	-		-	gmx:100819874	731.095